Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq45 120 3e-22 seq3126 107 2e-18 >seq45 Length=4641476 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 |||||| || | || ||||||||||| ||||| || || || || ||||| ||||| | Sbjct 476386 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 476445 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 || ||||| || |||||||||||||| |||||||| || |||||||| |||||||| | Sbjct 476446 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 476505 Query 4678 CGGCGGCAAACGCTAC 4693 | || ||||| || || Sbjct 476506 CTGCAGCAAAGGCGAC 476521 Score = 102 bits (112), Expect = 7e-17 Identities = 99/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 4926 CTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 |||||| || | |||||| ||||| || || |||||||||||||| || || | |||||| Sbjct 480415 CTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAGAAGGCGAGAACATG 480474 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 ||| || ||||||| ||| || | || || || |||||||| || | ||| || | ||| Sbjct 480475 AGAAATGAAGTACTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGATCCTTTGATAA 480534 Query 5045 ATCAAC 5050 |||||| Sbjct 480535 ATCAAC 480540 >seq3126 Length=28506 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || ||||| |||||||| || | ||| |||||||| ||||| || || Sbjct 15059 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 15000 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || | ||||| || ||||||||||| |||||||| || || ||||| ||| Sbjct 14999 AGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGCT 14940 Query 4692 AC 4693 || Sbjct 14939 AC 14938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426829083463877