Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq33 109 4e-19 >seq33 Length=5235935 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| |||| |||||||| || |||||||| ||||| || || || || |||| ||| Sbjct 587766 CATGTCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGCCCCAAGTC 587825 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 |||||||| ||| | || ||| || |||| || || | || || || || || Sbjct 587826 CCCCTCTTCTCTGGTGTAAAACCCCTGTTTATCCAGGAACTCACGTGACCCATTAGCATC 587885 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||| |||||||| ||||| | ||||||||||||| ||||| || || Sbjct 587886 CCAAATCTTTACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 587933 Score = 102 bits (112), Expect = 6e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 584716 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGC 584775 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || ||||||||||| || || || || || || |||| Sbjct 584776 ACTCCTAGTCCCATATCTCCAGACCTCTGGTACAGTTGGCAAGACAGTTCACCATTCAGA 584835 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | || ||||| || || | |||||| || Sbjct 584836 ACATAGAACTGGCAGAGAGCATGGCAAGGTGGCAAAGCCATCAG 584879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369316396758839