Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3126 111 2e-19 seq214 91.5 2e-13 seq45 89.7 7e-13 seq715 84.2 3e-11 >seq3126 Length=28506 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| |||||||| ||||| || ||||||| || | ||| || Sbjct 15059 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 15000 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || |||| || ||||| ||||||||||| |||||||| || || |||||||| Sbjct 14999 AGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGC 14941 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| ||| || || || | |||||| |||||||| ||||| || ||||| || || Sbjct 13466 ATCTTTAATGTACGTGTCAATGAGAAGACTGTACATTTCTGAGTGTATGTTTTCCATGGC 13407 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | ||| ||||||||||| || || Sbjct 13406 AATCTGGAAGCCATAGAAACAACGCGCCTCTGTGATCTGCACTTC 13362 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 16312 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 16253 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || || ||||| |||||||| ||||| Sbjct 16252 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 16218 >seq214 Length=1293776 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 82148 TGAAACTCTCCCGAAAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATGGAT 82089 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || ||||| |||| || |||||||| |||||||||||||| || | | | | || Sbjct 82088 TCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATGGGGGAAAGGAGAAGGCTG 82029 Query 77247 TTTCTGAGACCAT 77259 ||||||| ||||| Sbjct 82028 TTTCTGACACCAT 82016 >seq45 Length=4641476 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || | || ||||| || || | || || Sbjct 476400 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 476459 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||||||||| || || || || || |||||||| |||||||| || || ||||| ||| Sbjct 476460 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCG 476519 Query 48285 GTAAGTCTCTCTCC 48298 | |||||| || Sbjct 476520 ACCACTCTCTCACC 476533 >seq715 Length=106915 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 77976 ATCAATGACCAG-TCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034 ||||| |||| ||||| | |||| ||| | || |||||| || || ||||||||||| Sbjct 92906 ATCAAGGACCTCCTCACCGTTGTCCTCAACCCTTTCCATAAAAAGGTCGGGTATCCATAG 92965 Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAG 78094 || |||||||||| || |||| ||||||| || || | |||| | | || | Sbjct 92966 GGCCCCGAATAGATCTCTGGCTCTACGTTCTTCCTTGCCGTGACTCTTCCTCATGTCCAA 93025 Query 78095 AAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATA 78140 || || | ||| || |||||||||| ||||| || | |||||| Sbjct 93026 GAAGTCGAAAATGTCGAAATGCCATGGCTCTAGGTACACCGCCATA 93071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694300894720160