Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq715 107 3e-18 seq45 107 3e-18 seq3126 104 3e-17 >seq715 Length=106915 Score = 107 bits (118), Expect = 3e-18 Identities = 124/166 (75%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 76571 ATCAATGACCAC-TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAG 76629 ||||| |||| | ||||| | |||| ||||| || |||||| || || ||||||||||| Sbjct 92906 ATCAAGGACCTCCTCACCGTTGTCCTCAACCCTTTCCATAAAAAGGTCGGGTATCCATAG 92965 Query 76630 AGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAG 76689 || |||||||||| || |||||||||||| || || | |||| | | || | Sbjct 92966 GGCCCCGAATAGATCTCTGGCTCTACGTTCTTCCTTGCCGTGACTCTTCCTCATGTCCAA 93025 Query 76690 GAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATA 76735 ||| || | ||| || |||||||||| ||||| || | ||||||| Sbjct 93026 GAAGTCGAAAATGTCGAAATGCCATGGCTCTAGGTACACCGCCATA 93071 >seq45 Length=4641476 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || | |||||||| || || | ||| || Sbjct 476400 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 476459 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || ||| Sbjct 476460 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCG 476519 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 476520 ACCACTCTCTCACC 476533 >seq3126 Length=28506 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| || | || || Sbjct 15059 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 15000 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || | || ||||| ||||||||||| |||||||| || || || ||||| Sbjct 14999 AGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGCT 14940 Query 46774 AC 46775 || Sbjct 14939 AC 14938 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || ||||||||||| || ||||| || ||||| || ||||| Sbjct 16313 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCC 16254 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||| || || || ||||| |||||||| ||||| Sbjct 16253 TTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 16218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712556821030080