Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq479 138 3e-27 seq1287 120 7e-22 seq1 120 7e-22 seq6222 118 2e-21 >seq479 Length=216575 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || |||||||| ||||| || || ||||||||||| || | | ||| || || ||||| Sbjct 29624 ACCAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTCC 29683 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||||| ||||| ||||||||||| ||||| | | ||||| ||||| |||||| Sbjct 29684 AGTTGCTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTGA 29743 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| || ||| | || | |||| ||| || |||||||| || || || || Sbjct 29744 ATTTTGGCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGATGGTCTTC 29803 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| ||||||| |||||| Sbjct 29804 CCTGTGAGGGTCTTGACGAAGATCTGCAT 29832 >seq1287 Length=55868 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| ||||| || || ||||| ||||| || |||| || ||||| Sbjct 30927 AGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGATAGCGTTCTT 30986 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || ||| || || || || | | ||| ||||| | | ||| |||||| Sbjct 30987 CCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCC 31046 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| || ||| | |||| | || || |||||| || |||||| Sbjct 31047 TTATCTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACCTCCAGAGTA 31106 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||| || | |||||||||||| | |||||| Sbjct 31107 ATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCATT 31145 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| | ||| || || || || || ||||| || | || ||||| |||||| Sbjct 31389 AGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCGATAGTGTTCTGCCATCT 31448 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| ||||| ||||||| |||||||| | || || |||||||| || Sbjct 31449 TCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCGGAATGCCTTCCTTGTCC 31508 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| |||| | ||||||| || || || | || || || Sbjct 31509 TGAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCCACCTCCAACGTTATCGTC 31568 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||||||||| | ||||| Sbjct 31569 TTCCCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || || |||||||| || | || ||||| || || Sbjct 31161 AGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCGTCC 31220 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | | ||| ||||| | | ||||| || || || Sbjct 31221 TCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTGTCC 31280 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| ||| ||| |||||| | |||||| |||||||| || || || ||| Sbjct 31281 TGGATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTACTTCTAGCGTGATGGTT 31340 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | ||||||||||| | |||||| Sbjct 31341 TTCCCTGTCAACGTCTTCACGAAAATTTGCATT 31373 >seq1 Length=14292544 Score = 120 bits (132), Expect = 7e-22 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || ||||||||||| |||| | || | ||||||| Sbjct 9555968 AGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 9556027 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || ||||||||||| || | | ||| |||||||| || Sbjct 9556028 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTCC 9556087 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAG 152070 || || || ||||| |||| | | ||| ||| ||| | || |||| || || | Sbjct 9556088 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTC-CACCTCCAAG-GTGATGG 9556145 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||||||||| |||||| Sbjct 9556146 TCTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 9556179 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 9556424 AGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 9556483 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | ||| |||||||| || Sbjct 9556484 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCC 9556543 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| |||| | | |||| ||| || || | || || || Sbjct 9556544 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAAGGTGATGGTC 9556603 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| ||||| ||||||||||||| |||||| || Sbjct 9556604 TTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTT 9556638 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| |||| | || | ||||||| Sbjct 9556196 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 9556255 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || ||||||||||| |||| | ||| |||||||| || Sbjct 9556256 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCC 9556315 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| || || ||||| || Sbjct 9556316 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCCAGAGTGATG 9556372 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||||||||||||| |||||| Sbjct 9556373 GTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 9556407 >seq6222 Length=16261 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || || ||||| ||||||||||| |||| | || | |||||| Sbjct 1006 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 947 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| |||| | || ||||| || ||| Sbjct 946 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCT 887 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || ||| |||||| | |||| ||| ||| || |||||||| || Sbjct 886 TGGATTTTGGCCTTCACATTCTCTATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATT 830 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | || |||||||||| |||||| Sbjct 829 GTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 795 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || || ||||| ||||||||||| || | | || | ||| ||| Sbjct 550 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 491 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| ||||||||||| || | | || ||||| || ||| Sbjct 490 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 431 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||||| | |||| | ||| || ||||| || || || Sbjct 430 TGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGATGGTC 371 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| |||| |||||| || Sbjct 370 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 336 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 1234 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATCT 1175 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || ||||| || ||| Sbjct 1174 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 1115 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || | || | | |||| ||| ||| |||||||| || || Sbjct 1114 TGGATCTTGGCCTTCACGTTTTCAATGGTGTC---ACTGGGCTCAACTTCAAGGGTGATG 1058 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || ||||| |||| |||||| Sbjct 1057 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1023 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || | | || | ||| ||| Sbjct 778 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 719 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || ||||| || ||| Sbjct 718 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 659 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || | || | | |||| ||| ||| || || || || || Sbjct 658 TGGATCTTGGCCTTTACGTTTTCAATGGTGTC---ACTGGGCTCGACCTCGAGCGTGATG 602 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 601 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153194445133599