Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq278 152 7e-32 seq123 149 9e-31 >seq278 Length=756766 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || |||||||| || ||||| ||| ||| |||||||| |||||||||| Sbjct 339277 ATGAGTCTTGTAGTCTGGAATAGCTGCTCATCATCCCACTCTGGATGCTCTTGTTTCAAG 339218 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || || |||||||| || ||||| || || || |||||||| || || || Sbjct 339217 ATGTCACAGACTCTATTGTGTTCTCTCAGCCATATTGTTGCATACATCATTAGGCCCGGG 339158 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| |||||| |||| || || |||| | ||| || || || || | |||||| Sbjct 339157 ACCAAGCCAAACACCTCCTGGCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGA 339098 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | | || || || || | || ||||||||||| || ||||||||| Sbjct 339097 TAGATCATCTCCGCTTGAGTATCCTTCACTGTCGGTGGATACATTTCTCCATCAATCATC 339038 Query 9484 TG 9485 || Sbjct 339037 TG 339036 >seq123 Length=2623908 Score = 149 bits (164), Expect = 9e-31 Identities = 211/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 ||||||| || |||||||| ||| |||||| || || || || | | || Sbjct 1915395 GGAACGCCGCGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTTCAGCGACGCTG 1915336 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| |||||| |||| || ||||||| ||||| ||||||||||||||| |||||| Sbjct 1915335 TCTTCACGATCTCGAAGCCGGTCGCTCCGCCAAAGGTACTGGGCTTCCAGTACTCCGGGG 1915276 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| | | || || || ||||| |||||||| || | ||| | |||| Sbjct 1915275 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGGGAAAACGGAGCGCCAATCTCCACCATGC 1915216 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || ||||| ||| ||| ||| |||| || || | || || || | || | ||||| Sbjct 1915215 TTTCCCCGAAAATGCCGTCGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAACTCCA 1915156 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||| || | |||||| || || || || || || || |||||| ||||||| Sbjct 1915155 GAGCGTCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTG 1915099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716497133085760