Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1287 159 8e-34 seq1 154 4e-32 seq6222 132 1e-25 seq231 95.1 3e-14 >seq1287 Length=55868 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| ||| | ||||| || ||||| || | ||||||||| |||||| Sbjct 31597 CAAATTTTCGTGAAGACTTTGACAGGGAAGACGATAACGTTGGAGGTGGAACCGTCAGAC 31538 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || ||||||||||| ||||| || || || ||||||||| Sbjct 31537 ACGATCGAGAATGTGAAGGCGAAAATTCAGGACAAGGAAGGCATTCCGCCAGACCAGCAA 31478 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || || ||||| |||||||| || || || | || || || | Sbjct 31477 CGGCTTATTTTCGCGGGGAAGCAGCTGGAAGATGGCAGAACACTATCGGACTACAATATT 31418 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || |||||||| ||||||| || Sbjct 31417 CAGAAGGAATCAACTTTGCATCTGGT 31392 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | ||||| ||||| ||||| || || || ||| |||||| Sbjct 31369 CAAATTTTCGTGAAGACGTTGACAGGGAAAACCATCACGCTAGAAGTAGAACCATCAGAC 31310 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| ||||| || ||| |||||| ||||||||||| ||||| ||||| ||||| || Sbjct 31309 TCCATAGAGAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCAACAG 31250 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||||||||| || ||||| || || | || || ||| | Sbjct 31249 CGTTTGATTTTTGCAGGAAAACAGCTCGAGGACGGAAGAACGCTATCGGACTACAACATT 31190 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 31189 CAGAAGGAGTCGACGCTCCACCTTGT 31164 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| ||| | || || || || || || || ||||| || || || Sbjct 31141 CAAATTTTCGTGAAGACTTTAACCGGCAAGACTATTACTCTGGAGGTAGAGCCATCTGAT 31082 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| || || ||||| |||||||| ||||| || Sbjct 31081 ACGATAGAAAATGTGAAGGCGAAAATTCAAGATAAGGAAGGCATCCCTCCTGACCAACAG 31022 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || |||||||| ||||| || ||||| || || |||| |||||| | Sbjct 31021 CGATTGATTTTTGCGGGAAAACAACTCGAGGACGGAAGAACGCTATCCGACTATAACATT 30962 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| |||||||| || ||| | || |||||||| Sbjct 30961 CAAAAGGAATCAACTCTCCATTTGGTGTTGAGACT 30927 Score = 134 bits (148), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||||||||| || || || || || ||||| || |||||||| Sbjct 31831 AAAATGC---AGATCTTCGTGAAAACGCTAACCGGGAAGACTATCACGCTGGAGGTGGAG 31775 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || |||||||| || || |||||||||||||| |||||||| || Sbjct 31774 CCGTCGGACACGATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGGAATCCCCCCT 31715 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || | || ||||| || || ||||| |||||||| || || || | || Sbjct 31714 GATCAGCAGCGCTTGATATTCGCGGGGAAGCAGCTGGAAGATGGCAGAACGCTATCGGAC 31655 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||| | || || ||||| || || || |||| || Sbjct 31654 TACAACATTCAGAAGGAATCTACCCTTCA-CTTGGTT 31619 >seq1 Length=14292544 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||| | |||||||| || ||| Sbjct 9556176 CAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGA--GCCCAGTG 9556119 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| |||||||| || |||| Sbjct 9556118 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAGC 9556059 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || ||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 9556058 AGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 9555999 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || |||||||| || Sbjct 9555998 TCCAGAAGGAGTCCACCCTGCATCTCGT 9555971 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||| | ||||| || || ||| Sbjct 9556632 CAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGA--GCCCAGCG 9556575 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| ||||| || || |||| Sbjct 9556574 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAGC 9556515 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||||||| | || || |||| || ||| Sbjct 9556514 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACA 9556455 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || |||||||| || Sbjct 9556454 TCCAGAAGGAGTCCACCCTGCATCTCGT 9556427 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | ||||| || || ||||| || ||||| || || ||| Sbjct 9556404 CAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACTCTGGAGGTCGA--GCCCAGTG 9556347 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||| |||| Sbjct 9556346 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCAGC 9556287 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| |||||||| | || || |||| || ||| Sbjct 9556286 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 9556227 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 9556226 TCCAGAAGGAGTCCACCCTGCACCTGGT 9556199 >seq6222 Length=16261 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| | || || || || ||||| || ||||| | ||| || | Sbjct 798 CAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCG--AGCCCAGTG 855 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || || || || ||||||||||| || |||||||| |||| Sbjct 856 ACACCATAGAGAATGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAGC 915 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 916 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAACA 975 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| |||||||| || ||||| || || || | || ||| Sbjct 976 TCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGA 1016 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || || Sbjct 342 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGA--GCCTAGCG 399 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||||||||| || ||||| || |||| Sbjct 400 ACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 459 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| ||||| || | || || | || || ||| Sbjct 460 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 519 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 520 TCCAGAAAGAATCCACCCTGCACCTGGT 547 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || || || || || |||||||| || || || || ||| Sbjct 1026 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAAGTTGA--GCCCAGTG 1083 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || ||||| || ||||| || ||||||||||| || ||||| || |||| Sbjct 1084 ACACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 1143 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 1144 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACGCTGTCCGACTACAACA 1203 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 1204 TCCAGAAGGAGTCCACCCTGCACCTGGT 1231 Score = 113 bits (124), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| |||||||| || || ||| Sbjct 570 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGA--GCCCAGTG 627 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || ||||| || ||||| || ||||||||||| || ||||| || |||| Sbjct 628 ACACCATTGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 687 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 688 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 747 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 748 TCCAGAAGGAGTCCACCCTGCACCTGGT 775 >seq231 Length=1120191 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/103 (82%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || ||||| || ||||| |||||||| |||||||| || || | Sbjct 828858 CAGATCTTCGTGAAGACGCTCACGGGCAAAACCATCACCCTGGAGGTGGA--GCCCAATG 828915 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||||| ||||| |||||||| ||||| Sbjct 828916 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGG 828958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203077751132586