Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq6222 132 4e-26 seq1287 118 1e-21 seq231 82.4 7e-11 >seq1 Length=14292544 Score = 143 bits (158), Expect = 2e-29 Identities = 167/223 (75%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||||||||| ||||| |||||||| ||||||||| Sbjct 9556190 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 9556249 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || |||| ||| | || ||| Sbjct 9556250 CCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGGATGCCTTCC 9556309 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| |||| | || ||||| || | ||| ||||||| Sbjct 9556310 TTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAG 9556365 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || ||||| |||| ||||| ||||| ||||||||| Sbjct 9556366 AGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATG 9556408 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || |||||||| ||| ||||||||| ||||| |||||||| ||||||||| | || || Sbjct 9555971 ACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 9556030 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| ||||| | ||| || || | || | || ||||||||| | Sbjct 9556031 AGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGG 9556090 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || ||| Sbjct 9556091 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTA 9556150 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| ||||| |||||||| Sbjct 9556151 CCAGTGAGGGTCTTCACGAAGATCTGCAT 9556179 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || |||||||| ||| ||||||||| ||||| |||||||| |||||||| | || || Sbjct 9556427 ACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 9556486 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| || || | ||| | || ||||||||| | Sbjct 9556487 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGG 9556546 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | |||||||| | ||| ||||||| || || || || Sbjct 9556547 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAAGGTGATGGTCTTG 9556606 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||||| ||||| ||||||||||| Sbjct 9556607 CCGGTGAGGGTCTTCACGAAGATCTGCATGTT 9556638 >seq6222 Length=16261 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| || ||||| ||||| ||||| || ||||||||| Sbjct 556 AGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 497 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| ||||| ||||| | ||| || || | |||| || || Sbjct 496 CCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCT 437 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||||| | | |||||||| | ||| ||||| | || Sbjct 436 TTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTG 377 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || ||||||||||| Sbjct 376 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 336 Score = 129 bits (142), Expect = 5e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| Sbjct 784 AGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 725 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| || || ||||| | ||| || || | |||| || || Sbjct 724 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCT 665 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | || || | ||| | | ||||| || | ||| ||||| | ||| Sbjct 664 TTGT-CTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGT 606 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 605 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 566 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| || ||||| ||||| |||||||| |||||||| Sbjct 1012 AGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGA 953 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || |||| |||| || || Sbjct 952 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCT 893 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||||| | | ||||| || | ||| ||||| | || Sbjct 892 TTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACCTCAAGAGTG 833 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| || || ||||| ||||||||| Sbjct 832 ATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCATG 794 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| ||||||||| ||||| |||||||| || ||||| Sbjct 1240 AGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGA 1181 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | |||| || || Sbjct 1180 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCT 1121 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 ||||| ||| || |||| ||| | | ||||| || | ||| || || | || Sbjct 1120 TTGTCTTGGATCTTGGCCTTC-ACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGT 1062 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| || || || || ||||||||| Sbjct 1061 GATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 1022 >seq1287 Length=55868 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||||| || ||||||||||| || ||||| || || || | | || || Sbjct 31391 CACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCGATAGTGTTCTGCCATCTTC 31450 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||| || ||||| || || || || ||||| | |||| || ||||||||| | Sbjct 31451 CAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCGGAATGCCTTCCTTGTCC-T 31509 Query 41773 GATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || |||| | ||||| | | ||||| || |||||||||| ||||||||| | Sbjct 31510 GAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCCACCTCCAACGTTATCGTCT 31569 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || |||| ||||| |||||||| |||||| Sbjct 31570 TCCCTGTCAAAGTCTTCACGAAAATTTGCATG 31601 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| ||||| || || || | | || || |||||||| || |||||| Sbjct 31638 TCCTTCTGAATGTTGTAGTCCGATAGCGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAT 31697 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGA 41790 |||| |||||| || || | ||| | | ||| |||||| ||| |||| | ||||| Sbjct 31698 ATCAAGCGCTGCTGATCAGGGGGGATTCCCTCTTTGTCC-TGAATTTTCGCCTTCACGTT 31756 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| || ||||||||||| ||| || || || || || ||||| || || Sbjct 31757 CTCAATCGTGTCCGACGGCTCCACCTCCAGCGTGATAGTCTTCCCGGTTAGCGTTTTCAC 31816 Query 41851 GAAAATCTGCATGTT 41865 ||| |||||||| || Sbjct 31817 GAAGATCTGCATTTT 31831 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || ||||| ||||||||||||||| ||||| || || || | |||| ||| Sbjct 31164 ACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCGTCCTCG 31223 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || || || || |||| ||||||||||| | |||| | ||| |||||| | Sbjct 31224 AGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTGTCCTGG 31283 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| |||| | | | ||| | || || || | ||| || ||||| Sbjct 31284 ATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTACTTCTAGCGTGATGGTTTTC 31343 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| |||||| |||||||| ||||| Sbjct 31344 CCTGTCAACGTCTTCACGAAAATTTGCAT 31372 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || ||||| | ||||||| ||| || || ||||| ||||||||||||||||| Sbjct 30918 CCACCACGTAGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGAT 30977 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| ||||| || || || || || |||| ||||||||||| | || Sbjct 30978 AGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGG 31037 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||| | | ||| |||| | ||||| | || || | ||| || Sbjct 31038 ATGCCTTCCTTAT-CTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTAC 31096 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || | ||||| |||||||| ||||| Sbjct 31097 CTCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 >seq231 Length=1120191 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| ||||||| ||| ||||| |||| || |||||||| || ||||| ||| Sbjct 829117 TTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCCAGCTGCTTCCCCGCGAAGATC 829058 Query 41735 AGGCGCTGTTGGTCCGCGGG 41754 |||||||| ||||| | ||| Sbjct 829057 AGGCGCTGCTGGTCGGGGGG 829038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462059158022800