Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq30392 131 1e-25 seq25250 131 1e-25 >seq30392 Length=48271 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | |||||||||||| || ||||| ||||| | |||||| | | || Sbjct 47849 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 47908 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || || ||||||||||| ||| | |||||||||||| Sbjct 47909 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 47968 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| ||||| ||| |||||| Sbjct 47969 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAAGGTGATGGTC 48028 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 48029 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 48060 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | || | |||||||||||| || ||||| ||||| | |||||| | | || Sbjct 47621 AGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 47680 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || || ||||||||||| ||| | |||||||||||| Sbjct 47681 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 47740 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| ||||| || | ||| |||||| Sbjct 47741 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATGGTC 47800 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 47801 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 47832 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | |||||||||||| || ||||| ||||| | |||||| | ||||| Sbjct 48077 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCC 48136 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || || ||||||||||| ||| | |||||||||||| Sbjct 48137 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 48196 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || || ||||| | | | || |||| |||||| || | || |||||| Sbjct 48197 TGAATTTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTC 48256 Query 21144 TTGCCGGT 21151 ||||| || Sbjct 48257 TTGCCAGT 48264 >seq25250 Length=4203 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | ||| | || || | ||||| ||| || |||||||| ||||| ||||| | Sbjct 3568 TTCCACCCCTCAGGCGTAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 3627 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | |||| ||||| |||||||| ||| | || || |||||||| || || Sbjct 3628 ACAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 3687 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| |||||| || || | | | ||||||| |||||| Sbjct 3688 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCACTGGGCTCGA 3747 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| ||| ||||||||||| || | || || ||||| || |||||| Sbjct 3748 CTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3797 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | || || | ||| | |||||||| || || ||||| ||||| | Sbjct 3796 TTCCACCCCGCAGGCGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 3855 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | |||| ||||| |||||||| || | || || ||||||||||| || Sbjct 3856 ACAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGG 3915 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| || ||||| |||||| ||| || | ||| ||||||| |||||| Sbjct 3916 GAATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTATCACTGGGCTCGA 3975 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || ||||||||||| || | || || ||||| || |||||||| Sbjct 3976 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 4027 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | ||| | ||||| | ||| | |||||||||||| || ||||| ||||| | Sbjct 3340 TTCCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 3399 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | | || |||||||||||||| || | || || ||||||||||| || Sbjct 3400 ACAGGGTGCGTCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGG 3459 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| || ||||| |||||| || || | | | || |||| |||||| Sbjct 3460 GAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCTATGGTGTCACTGGGCTCGA 3519 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| ||| ||||||||||| || | || || ||||| || |||||| Sbjct 3520 CTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3569 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || | ||| | || || | ||||| ||| || |||||||| ||||| ||||| Sbjct 3110 GTTGCCACCCCTCAGGCGCAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTC 3169 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| | |||| ||||| |||||||| || | || || |||||||| || Sbjct 3170 AGACAGGGTACGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGG 3229 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | ||| |||||||| |||||| || || | | | ||||||| |||||| Sbjct 3230 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCACTGGGCTC 3289 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| ||| ||||||||||| || | || || ||||| || |||||| Sbjct 3290 GACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421897992618608