Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq25250 176 5e-39 seq30392 143 3e-29 seq54367 102 8e-17 seq22784 89.7 5e-13 >seq25250 Length=4203 Score = 176 bits (194), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 3569 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3510 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| |||||| || || | |||||||||||||| ||| | |||| Sbjct 3509 TGACACCATAGAAAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCCGACC 3451 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| ||| |||||||||||||| || | |||||||| ||||||| Sbjct 3450 AGCAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACA 3391 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| |||| || ||||| ||| ||||| ||||||| || Sbjct 3390 ACATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGCCTGAGGGGTGG 3342 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || || || || || || || ||||| |||||||| | || ||||| Sbjct 4029 GAAAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAGC 3970 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| || | | | | | |||| | || || | |||||||||||||| ||| | | Sbjct 3969 CCAGTGATACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCCG 3910 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| ||| |||||||| ||||| |||| |||||||| |||| Sbjct 3909 ACCAGCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACT 3850 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| ||| |||| || ||||| || ||||| || |||| || Sbjct 3849 ACAACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGCCTGCGGGGTGG 3798 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 3341 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3282 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | |||||| || || | ||||| |||||||| ||| | || || Sbjct 3281 TGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 3222 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| |||||||| ||||| |||| || ||||| |||||||| Sbjct 3221 GCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGTACCCTGTCTGACTACAA 3162 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| ||||| | || |||||||| || ||||| ||||||| ||| Sbjct 3161 CATCCAAAAGGAATCTACTCTGCATCTTGTCCTGCGCCTGAGGGGTGGC 3113 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 3797 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3738 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| |||||| || || | ||||| |||||||| ||| | || | Sbjct 3737 TGATACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATC 3679 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| || |||||||| ||||| |||| |||||||| ||||||| Sbjct 3678 AGCAGAGGCTGATCTTTGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACA 3619 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| ||||| | || |||||||| || | ||| ||||||| || Sbjct 3618 ACATCCAAAAGGAATCTACTCTGCATCTTGTCCTACGCCTGAGGGGTGG 3570 >seq30392 Length=48271 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 48060 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 48001 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | |||||| Sbjct 48000 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 47941 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | |||||||| |||||||||| Sbjct 47940 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 47881 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || ||||| ||| ||||| ||||||| || Sbjct 47880 ATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGCCTGAGGGGTGG 47834 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40708 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTC 40767 || || || ||||| |||||||| | || || || ||| |||| | | | | | Sbjct 48270 ACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGTGACACCATTGAGAATGTG 48211 Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| ||||||| ||||| || ||||| ||| | |||||||| | || |||| || Sbjct 48210 AAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCT 48151 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 || || |||||||| |||| |||||||| ||||||||||||||||||||| |||| Sbjct 48150 GGGAAGCAGCTGGAGGACGGACGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACT 48091 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| ||| ||||| ||||||| || Sbjct 48090 CTCCATCTTGTGCTGCGCCTGAGGGGTGG 48062 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || || | | Sbjct 47832 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCTAGT 47773 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | |||||| Sbjct 47772 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 47713 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | |||||||| ||||||||| Sbjct 47712 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 47653 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || ||| ||||| ||||||| ||| Sbjct 47652 ATCCAGAAGGAGTCCACTCTCCACCTTGTGCTGCGCCTGAGGGGTGGC 47605 >seq54367 Length=7739 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||||||| || ||||| ||||| || || || |||||||| | |||| || Sbjct 7540 GAACCGCTGCTGCGGGACAACCCTCGCCGCTTTGTCATCTTCCCCATCGAGTACCATGAT 7481 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 7480 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 7427 >seq22784 Length=40504 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || ||||| || || || || ||| ||||||||||||| || || || ||||||||| Sbjct 31525 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 31466 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 || ||||| | ||||| ||||| || ||||||||| ||| ||||| || ||| || Sbjct 31465 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTTATTAGCAGAGAT 31406 Query 117164 GAGG 117167 |||| Sbjct 31405 GAGG 31402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514767172434880