Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq25250 111 2e-19 seq4243 105 8e-18 seq19502 104 3e-17 >seq25250 Length=4203 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || || | |||| ||| | ||| | ||| |||||| || || ||||| |||| Sbjct 3341 TCCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 3400 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || || | || || ||||| || |||||||| || || | ||||||||||| || Sbjct 3401 CAGGGTGCGTCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGG 3460 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||| |||||| ||| || |||| | | | ||||| || | || || Sbjct 3461 AATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCTATGGTGTCACTGGGCTCGAC 3520 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||||| ||||| || || ||||| |||||||| |||||| Sbjct 3521 TTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3569 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| || | ||| | ||| ||| || || || ||||| |||| ||| || || || Sbjct 3810 CGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 3869 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || || || |||||||| || || | ||||||||||| || | || ||| ||| Sbjct 3870 TCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTG 3929 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || ||||| || | | || || || | || || || | |||||| Sbjct 3930 TCTTGGATCTTGGCTTTGACATTCTCGATGGTATCACTGGGCTCGACTTCCAGAGTGATG 3989 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || ||||| || || ||||| |||||||| ||||||||| Sbjct 3990 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTT 4028 >seq4243 Length=13345 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 962 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 903 Query 60126 TACTACCGAGGATTGAATATA 60146 ||||| |||||| |||| ||| Sbjct 902 TACTAACGAGGAGTGAAAATA 882 >seq19502 Length=9771 Score = 104 bits (114), Expect = 3e-17 Identities = 73/83 (88%), Gaps = 3/83 (4%) Strand=Plus/Plus Query 60061 ATTTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||||||||| | | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 9117 ATTTTCTCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 9176 Query 60118 CACCACTATACTACCGAGGATTG 60140 ||||||||||||| |||||| || Sbjct 9177 CACCACTATACTAACGAGGAGTG 9199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571315915828640