Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq25250 122 6e-23 seq30392 114 8e-21 >seq25250 Length=4203 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| || || || | |||| ||| || || ||||||||||| ||| Sbjct 3114 CCACCCCTCAGGCGCAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 3173 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| || ||||| ||||| || |||| |||||| || ||| Sbjct 3174 AGGGTACGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 3233 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | ||| | | ||||| Sbjct 3234 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCACTGGGCTCGACT 3293 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||||||||||||||| Sbjct 3294 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3340 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | ||| || || || | || |||||||| ||||||||||| || Sbjct 3797 TCCACCCCGCAGGCGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 3856 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || |||| |||| || ||||| ||||| || |||| |||||||||| ||| Sbjct 3857 CAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGG 3916 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || ||| ||||| ||| || ||||| | || | || | ||| | | |||| Sbjct 3917 AATGCCCTCTTTGTCTTGGATC-TTGGCTTTGACATTCTCGATGGTATCACTGGGCTCGA 3975 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| ||||| || || || ||||||||||||||||| Sbjct 3976 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4024 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| | |||||| || || | ||| || ||||| ||||||||||| || Sbjct 3341 TCCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 3400 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || |||| ||| ||||| ||||| || |||| |||||||||| ||| Sbjct 3401 CAGGGTGCGTCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGG 3460 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| ||||| ||| | | |||| | || | | ||||| Sbjct 3461 AATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCTATGGTGTCACTGGGCTCGAC 3520 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||||||||||||||| Sbjct 3521 TTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3568 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| | || || || || | |||| ||| || || ||||||||||| || Sbjct 3569 TCCACCCCTCAGGCGTAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 3628 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || |||| |||| || ||||| || || || |||| |||||| || ||| Sbjct 3629 CAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 3688 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | || | ||| | | ||||| Sbjct 3689 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCACTGGGCTCGAC 3748 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||||||||||||||| Sbjct 3749 TTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3796 >seq30392 Length=48271 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||| || || | ||| || ||||| ||||||||||||||| Sbjct 47834 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 47893 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || || || |||| ||||||||| ||| Sbjct 47894 AGGGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 47953 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | || | | ||||| Sbjct 47954 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACT 48013 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| ||||| || || || |||||||||||||||||| Sbjct 48014 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATC 48061 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||| ||||| | ||| || ||||| ||||||||||| ||| Sbjct 47606 CCACCCCTCAGGCGCAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 47665 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || || || |||| ||||||||| ||| Sbjct 47666 AGGGTGCGTCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 47725 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | || | | || || Sbjct 47726 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACC 47785 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| || || || |||||||||||||||||| Sbjct 47786 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATC 47833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322795638961280