Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq6155 365 3e-96 seq17576 86.0 4e-12 >seq6155 Length=1204 Score = 365 bits (404), Expect = 3e-96 Identities = 655/953 (69%), Gaps = 18/953 (2%) Strand=Plus/Plus Query 107676 TTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTG 107735 ||||| ||||||| ||||| | || ||| || |||||||| |||||||| ||||| Sbjct 142 TTCATTGAGTTCCCGCTGAGCCAGGAGGAGGCTGAGTTCCCCATCGCCTACTCCATGGTC 201 Query 107736 GTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAAC 107795 |||| || || || || | ||||| ||||| || || || | || ||||| |||||| Sbjct 202 ATCCACGACAAAATCGAGATGTTTGAGCGGCTCCTACGGTCCCTCTACGCCCCGCAGAAC 261 Query 107796 ATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCC 107855 | ||||| |||||| | |||| |||||||||| | ||| ||||||| || |||| Sbjct 262 GTCTACTGCGTCCACATTGATGGAAAGTCCCCAGCTGCCTTCCAAGAGGCTGTGCGGGCC 321 Query 107856 ATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCC 107915 || | ||||||||||||||||||| |||| ||| ||| | || ||| Sbjct 322 ATCGTAGCCTGCTTCCCCAATGTCTTTGTGGC---TAACC----CCCCGCGGA----GCC 370 Query 107916 TCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTG 107975 ||||||||| | |||| || ||||| ||||| ||| | ||| |||| ||||| | || Sbjct 371 TCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGGAGAGCCCCGTC 430 Query 107976 CCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAG 108035 || ||||| || | || ||||| || || | || |||||||| ||||||||||| ||| Sbjct 431 CCCTGGAACTATGTCCTCAATACCTGTGGCGCCGATTTCCCCATCAAGACCAATGCTGAG 490 Query 108036 ATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCT 108095 ||||||| ||||| ||| || || |||| ||||| |||||||| ||| || | Sbjct 491 ATGGTCCGTGCCCTGAAGGTGCTGCAGGGGCGGAACAACATGGAGTCAGAGAAGCCCACA 550 Query 108096 GAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACC 108155 | ||||||| | |||||| | |||| |||||| || | || | | || || Sbjct 551 GCCCCCAAAAAGGAGCGCTGGCAGTACCACTATGAAGTAAGGAACTTCATCTTCCGGACA 610 Query 108156 AGCA-AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTT 108214 || ||| || |||| || ||| |||| | ||||||||| | || || || || | Sbjct 611 CCCACAGAGAAACCACCC-CCACCTCATAACTATCCCATGTTCTCGGGCAACGCATACAT 669 Query 108215 TGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGT 108274 | || | || ||||| || | || |||| || | ||| | | || | | Sbjct 670 AGCGGTTACACGGGCCTTCGTGCGTCACATCTTTGAGAGCCCCACAGTGCAGCAGTTCCT 729 Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334 || |||| |||||||||||| ||||| ||||| ||| |||||||||| || | || Sbjct 730 CGAGTGGGCCAAAGACACCTACAGCCCAGACGAGCACGTCTGGGCCACTCTCAACCGCAT 789 Query 108335 TCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGC 108394 || | |||| ||| | ||| || ||||| || | || ||||||| || Sbjct 790 GCCTGGCGTGCCAGGCAGCATGCCTCAGAACGACAAGTTCCAGCTGTCGGACATGAACGC 849 Query 108395 CATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTA 108454 | | | | || || ||||||||||| | ||||| || ||||| ||| || || || Sbjct 850 CCTGCCTCGCCTAGTTAAGTGGCAGTATCTGGAGGGCGACACCAGCAAGGGCGCTCCCTA 909 Query 108455 TGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTA 108514 | |||||| | || || | | | || ||||||| || |||| || ||||||| Sbjct 910 CCCGCCCTGCACCGGCCAGCACCAGCGCTCCGTCTGCATCTATGGGGTGGGCGACCTGTC 969 Query 108515 CTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAA 108574 |||||| || ||| | || || |||||||| |||||||| ||||| ||| || ||| | Sbjct 970 CTGGATGCTGCAGCAGCACCATCTCTTGGCCAACAAGTTCGACCCCCTGGTAGACGATGA 1029 Query 108575 -----CGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 || | | |||||| | || ||| || | || || |||||| |||| || Sbjct 1030 GATGCCGCCATCCAGTGCCTCGAGGAGCACTTGCGCCACAAGGCCCTCTACGG 1082 >seq17576 Length=9823 Score = 86.0 bits (94), Expect = 4e-12 Identities = 194/288 (67%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || || || || || || | ||||| || ||||| | Sbjct 8955 TTGAGTGGGCAAAAGACACTTACAGTCCAGATGAGTACTTATGGGCAACAATTCAGAGAA 9014 Query 108334 CTCCGTGGATGCCTGGCT-CTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| | | || || | | ||| || ||| || ||||| || | || |||||| Sbjct 9015 -TCCCCGAAGTCCCGGGTGCAGTTTCTTCTAGCGAC---AAGTACGACGTTTCTGACATG 9070 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || ||||| || || || Sbjct 9071 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAAGGTGCA 9130 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| || |||| | || | | |||| ||| |||| || ||| Sbjct 9131 CCCTACCCACCGTGTAGTGGAGTTCACATTCGCTCTGTCTGTGTTTTTGGGGTAGGTGAC 9190 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 9191 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 9238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347970885209112