Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq25250 102 6e-17 seq30392 87.8 1e-12 >seq25250 Length=4203 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| ||||| ||||||||||| | || || | ||||||| |||| Sbjct 3594 TGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGTTGT 3653 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || ||||| ||| | ||| ||||| || || | Sbjct 3654 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTG 3713 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| || |||| ||||||| ||| | ||||||| | ||||| ||| Sbjct 3714 GCCTTGACGTTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATGGTCTTGCCAGTC 3773 Query 18303 AATGTTTTTACAAAAATTTGCATT 18326 | || || ||||| || |||||| Sbjct 3774 AGGGTCTTCACAAAGATCTGCATT 3797 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| ||||| ||||||||||| | || || | ||||||| |||| Sbjct 3138 TGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGTCCGTCTTCCAGTTGT 3197 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || |||| || || || ||||| ||| | ||| ||||| || || | Sbjct 3198 TTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTG 3257 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| || |||| ||||||| ||| | ||||||| | ||||| ||| Sbjct 3258 GCCTTGACATTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATGGTCTTGCCAGTC 3317 Query 18303 AATGTTTTTACAAAAATTTGCATT 18326 | || || ||||| || |||||| Sbjct 3318 AGGGTCTTCACAAAGATCTGCATT 3341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || || || ||||||||||| | || || | |||||||| ||| Sbjct 3366 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGT 3425 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || |||| || || || || || ||| | ||| || || || || | Sbjct 3426 TTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTCCTGGATCTTG 3485 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | | | | ||||||| ||||||| ||| | ||||||| | ||||| ||| Sbjct 3486 GCCTTGACGTTTTCTATGGTGTCACTGGGCTCGACTTCCAAGGTGATGGTCTTGCCAGTC 3545 Query 18303 AATGTTTTTACAAAAATTTGCATT 18326 | || || ||||| || |||||| Sbjct 3546 AGGGTCTTCACAAAGATCTGCATT 3569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| ||||| || | || || | || || || || ||||| || ||||||||||| | Sbjct 3797 TCCACCCCGCAGGCGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 3856 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||| ||||||||| || |||| || || || || || ||| Sbjct 3857 CAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGG 3916 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| || || || || | | || ||||| | | | || |||| ||||||| Sbjct 3917 AATGCCCTCTTTGTCTTGGATCT-TGGCTTTGACATTCTCGATGGTATCACTGGGCTCGA 3975 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| | |||||| | ||||| |||| || || ||||| || ||||||||| Sbjct 3976 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTT 4028 >seq30392 Length=48271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || || || ||||||||||||| || || | |||||||| || Sbjct 47858 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGC 47917 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || || || || || ||| | ||||||||| || || | Sbjct 47918 TTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 47977 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| ||||||| ||| | ||||||| | ||||| ||| Sbjct 47978 GCCTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAAGGTGATGGTCTTGCCAGTC 48037 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 48038 AGGGTCTTCACAAAGATCTGCAT 48060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379019502978060