Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq51162 111 1e-19 seq25250 107 2e-18 seq52070 102 7e-17 seq30392 93.3 4e-14 >seq51162 Length=873 Score = 111 bits (122), Expect = 1e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| || ||| |||||||| || || || || || || ||||| || || || | Sbjct 548 CCACCTCATCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCATTTGATGG 489 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| || | ||||| || || |||||||||||||| || | Sbjct 488 TCCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGGG 429 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| |||||| ||| ||||||||||| || Sbjct 428 TGCCAGTCTCGGTCTGGGACTCGATGATGGC 398 >seq25250 Length=4203 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 3568 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 3509 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | || |||||| || ||| | || ||||||||| Sbjct 3508 GACACCATAGAAAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCCGACCAG 3449 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | || || ||||||||||||||| ||||||| | | | || || || || || Sbjct 3448 CAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACAA 3390 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| ||||| || || | |||||||| || Sbjct 3389 CATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGCCTGAGGGGTGG 3342 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 3340 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 3281 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || ||||||||| ||| | || || || ||| Sbjct 3280 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3221 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||||||||| |||||||| || || || || ||| Sbjct 3220 CAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGTACCCTGTCTGACTACAAC 3161 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| ||||| ||||| ||||| || || | |||||||| || Sbjct 3160 ATCCAAAAGGAATCTACTCTGCATCTTGTCCTGCGCCTGAGGGGTGG 3114 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 3796 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 3737 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || ||||||||| ||| | || || || ||| Sbjct 3736 GATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3677 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||||||||| |||||||| || || || || ||| Sbjct 3676 CAGAGGCTGATCTTTGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACAAC 3617 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| ||||| ||||| ||||| || || | |||||||| || Sbjct 3616 ATCCAAAAGGAATCTACTCTGCATCTTGTCCTACGCCTGAGGGGTGG 3570 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| ||||| ||||| || ||||| | || || || || Sbjct 4028 AAAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAGCC 3969 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || | |||| | |||||| | || ||||| || ||| | || ||||| Sbjct 3968 CAGTGATACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCCGA 3909 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | || || |||||||||||||| |||||||| || || || || Sbjct 3908 CCAGCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTA 3849 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| || || || ||||| || || | ||| |||| || Sbjct 3848 CAACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGCCTGCGGGGTGG 3798 >seq52070 Length=3230 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| || |||| || || || || ||||| || || |||| || || | ||| | Sbjct 1226 TTTCAACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTC 1285 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | |||||| ||||| |||||||| || || || | || || || | |||| ||||| Sbjct 1286 TCTGCTCCTCCTTGCCTGTGTTCTTCTTTAAGTCAAGGAACTCAAAGATGTCCAAATGCC 1345 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 ||||||| ||||| | |||||| || || ||||||| || Sbjct 1346 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCTGAT 1384 >seq30392 Length=48271 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| || Sbjct 47832 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCTAGT 47773 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 47772 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 47713 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | || || || ||||| || ||| ||||||| | | | || || || || || Sbjct 47712 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGA-TGGACGCACCCTGTCTGACTACAA 47654 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| || || || || | |||||||| || Sbjct 47653 CATCCAGAAGGAGTCCACTCTCCACCTTGTGCTGCGCCTGAGGGGTGG 47606 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 48060 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 48001 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 48000 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 47941 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | || || || || || || ||| ||||||| | | | || || ||| || || Sbjct 47940 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACTACAA 47882 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| ||||| || || | |||||||| || Sbjct 47881 CATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGCCTGAGGGGTGG 47834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445375306848960