Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq22784 120 4e-22 seq54367 111 2e-19 seq52070 105 8e-18 >seq22784 Length=40504 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | || || || || || ||||| ||||| ||||| | ||| | Sbjct 31402 CCTCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 31461 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 31462 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 31521 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 31522 CAACGACTCTCTCACC 31537 >seq54367 Length=7739 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||||||| || | ||| |||||||| |||||||| ||||||| || | || | Sbjct 4167 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4226 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| || || ||||| | Sbjct 4227 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAAG 4286 Query 33724 C 33724 | Sbjct 4287 C 4287 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 |||||||||||||| | || |||||||| || || || || || || || || || ||| Sbjct 2314 GACATAACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTCCCT 2373 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 2374 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 2408 >seq52070 Length=3230 Score = 105 bits (116), Expect = 8e-18 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| ||||| ||||||||||| || || | || || ||||| | ||| || Sbjct 1231 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCTCTGC 1290 Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| || ||||| ||||| |||||| || |||||| | | || || |||||||||| Sbjct 1291 TCCTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAATGCCACGG 1349 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| ||||| | | | ||||| Sbjct 1350 CTCCAGGTAGATGGCAAAAGCCCCAGG 1376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629265029528640