Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq22784 114 2e-20 seq54367 111 2e-19 seq54432 107 3e-18 seq52070 105 9e-18 >seq22784 Length=40504 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | || ||||| || || ||||| ||||| ||||| | ||| | Sbjct 31402 CCTCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 31461 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 31462 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 31521 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 31522 CAACGACTCTCTCACC 31537 >seq54367 Length=7739 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 4167 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4226 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 4227 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAAG 4286 Query 36300 C 36300 | Sbjct 4287 C 4287 >seq54432 Length=8045 Score = 107 bits (118), Expect = 3e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || |||||| | | | ||| || ||||||||||||||||| ||| Sbjct 1267 TATTTTTTATTAAATGCTTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 1326 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 1327 AAGTAGAGATTGATTGCTGCCAGTATGTATTCTTCAGGGGATAATTTGTGCATCAGCAAA 1386 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || || ||||| ||||| ||||| ||||| | || || || |||| | |||||| Sbjct 1387 TGAGTATCATAAATAATAAATCCACAGAACAGCAGAGCTCCGGCCGCAGCAAATACCAGC 1446 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 1447 TCTATTGTCTCACT 1460 Score = 107 bits (118), Expect = 3e-18 Identities = 114/148 (77%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 9450 AAAAT-TAAAATCCACAA---AGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCT 9505 ||||| ||||||| ||| ||||||| || | |||||||| ||| ||||| || || Sbjct 2568 AAAATATAAAATCTTCAATATAGTAACATAC---CTTGCTCCAAATTTGCTGAAGTCCCT 2624 Query 9506 CTTTGATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGC 9565 |||||| || | ||||||||||| || | |||||||| |||||||| || || || || Sbjct 2625 CTTTGACTGCAAGGTATATGCAGTGAGTCCGAGAAACACAGCAGTAGTAAGAATAAAGGC 2684 Query 9566 TTGCATAACGACATGCACATCATAGAAA 9593 ||||| |||| ||||||||||||| Sbjct 2685 TTGCAAGACGATGGACACATCATAGAAA 2712 >seq52070 Length=3230 Score = 105 bits (116), Expect = 9e-18 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||| ||||||||||| || || | || | ||||||| ||| || Sbjct 1231 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCTCTGC 1290 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 ||||| || ||||| ||||| |||||| || |||||| | | || || |||||||||| Sbjct 1291 TCCTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAATGCCACGG 1349 Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 1350 CTCCAGGTAGATGGCAAAAGCCCCAGG 1376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657595352093920