Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq22784 105 6e-18 seq54367 95.1 1e-14 >seq22784 Length=40504 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| |||||||| || || || || || | ||| ||||||| || | || | Sbjct 31402 CCTCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 31461 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| |||||||| || || |||||||| || || |||||||||||||| | Sbjct 31462 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 31521 Query 14014 C 14014 | Sbjct 31522 C 31522 >seq54367 Length=7739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||||| | | |||||| || |||||||| | ||| |||||||| || ||||||| Sbjct 6182 TCTCTTTAGGATCTTTAATGTAGGTGTCAATAAGGAGGCTGTACATTTCTGAATGTATGT 6241 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||||||| || ||||| || ||||| || || | |||||| | ||||||||| Sbjct 6242 TTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTC 6296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || ||||| ||||| | |||||||||| |||| || ||||||||||| || || Sbjct 2311 TTTGACATAACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTC 2370 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 |||||||| || || |||||||| || ||||| ||||| Sbjct 2371 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479307110639200