Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq22784 102 8e-17 seq54367 95.1 1e-14 >seq22784 Length=40504 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| |||||||| || || || || || | ||| ||||||| || | || | Sbjct 31402 CCTCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 31461 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||| ||||| || || || |||||||| || || |||||||||||||| | Sbjct 31462 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 31521 Query 13802 C 13802 | Sbjct 31522 C 31522 >seq54367 Length=7739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 13913 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||||| | | |||||| || |||||||| | ||| |||||||| || ||||||| Sbjct 6182 TCTCTTTAGGATCTTTAATGTAGGTGTCAATAAGGAGGCTGTACATTTCTGAATGTATGT 6241 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 |||| || || ||||| || ||||| ||||| | |||||||| |||||| || Sbjct 6242 TTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTC 6296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478168910116320