Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq22784 129 8e-25 seq54367 111 2e-19 seq52070 111 2e-19 >seq22784 Length=40504 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | || ||||| || || ||||| ||||| ||||| | ||| | Sbjct 31402 CCTCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 31461 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 31462 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 31521 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 31522 CAACGACTCTCTCACC 31537 >seq54367 Length=7739 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 4167 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4226 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| || || ||||| | Sbjct 4227 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAAG 4286 Query 42207 C 42207 | Sbjct 4287 C 4287 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| |||||||| || || || || | || || |||||||||||||| |||||| Sbjct 6184 TCTTTAGGATCTTTAATGTAGGTGTCAATAAGGAGGCTGTACATTTCTGAATGTATGTTT 6243 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| ||||| || || |||||||| | || || || || ||||||||| Sbjct 6244 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTCT 6297 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 |||||||||||||| | || |||||||| || || || || || || || ||||| ||| Sbjct 2314 GACATAACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTCCCT 2373 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || ||||||||||| ||||| ||||| Sbjct 2374 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 2408 >seq52070 Length=3230 Score = 111 bits (122), Expect = 2e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||| ||||||||||| || || | || || ||||||| ||| ||| Sbjct 1231 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCTCTGC 1290 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||||| || ||||| ||||| |||||| || |||||| | | || || |||||||||| Sbjct 1291 TCCTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAATGCCACGG 1349 Query 72141 TTCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 1350 CTCCAGGTAGATGGC 1364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670550376022880