Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq25250 163 7e-35 seq33368 159 8e-34 seq54367 111 4e-19 seq22784 107 4e-18 >seq25250 Length=4203 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | || || |||||||| || || |||||| Sbjct 3795 ATTCCACCCCGCAGGCGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 3854 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| |||||||| ||||| || || |||||||| || || || Sbjct 3855 GACAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGG 3914 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || || ||||| ||||| ||||| || | |||||| || || || Sbjct 3915 GGAATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTATCACTGGGCTCG 3974 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || ||||| ||||| || || || ||||| ||||||||||| Sbjct 3975 ACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 4027 >seq33368 Length=40093 Score = 159 bits (176), Expect = 8e-34 Identities = 133/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | || || | ||||||||| Sbjct 25340 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGACACAGTATTCTTCATC 25281 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||| ||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 25280 CTGAGGAAGAAGTTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 25221 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 25220 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 25178 >seq54367 Length=7739 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 4302 GGAGAACGTGTAGTAGCTTTTGCAGCCGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 4243 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 4242 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 4183 Query 269246 ATAAGCAGGGACGA 269259 || || || ||||| Sbjct 4182 ATCAGTAGAGACGA 4169 >seq22784 Length=40504 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 31525 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 31466 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || || | || ||||| || Sbjct 31465 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTTATTAGCAGAGAT 31406 Query 269258 GA 269259 || Sbjct 31405 GA 31404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150362966129104