Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq4510 154 2e-32 seq9089 127 3e-24 >seq4510 Length=123898 Score = 154 bits (170), Expect = 2e-32 Identities = 223/314 (71%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || || || ||||| || ||| | |||| || ||| | | || Sbjct 5449 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 5390 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| ||| |||| ||||| | ||| |||||||||||||| |||||||| | || | Sbjct 5389 TATTGATGATGTCAAAGCCCACTTTTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGAG 5330 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || |||||||| |||| || | || Sbjct 5329 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGAGCTCCCATTTCCACCATTG 5270 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| ||||| |||||||| || | | || | ||| | ||||| Sbjct 5269 TTTCACCAAAGATGGCACCTGGACGTGGCTTTTCTACGAGAAGGCCTGGGTATAGCTCCA 5210 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-- 8976 ||| || || ||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 5209 TAGCATCAATATCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5150 Query 8977 TTTATTAATaaaaa 8990 || || | |||||| Sbjct 5149 TTGATGATTAAAAA 5136 Score = 113 bits (124), Expect = 6e-20 Identities = 178/255 (70%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 9609 TTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATG 9668 ||| || || | ||||||| ||| || || ||||| || || ||| ||| || || || Sbjct 3462 TTCACCTATTAGTATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCAGGGTG 3403 Query 9669 TTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACAT 9728 || ||||||| | || || || | |||||| ||||| ||||| || || |||||||| Sbjct 3402 CTCCTGTTTCAGGATGTCACAGACCCGGTTGTGCTCCCTCAGCCATATTGTTGCGTACAT 3343 Query 9729 CATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGG 9788 ||| | || || |||| || || |||| || || |||| | ||| | ||| || Sbjct 3342 CATCAAGCCTGGGACCAAACCGAACACCTCCTGCCCCACAGAAAACTGCAAGTGTTCAGG 3283 Query 9789 CACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTC 9848 || | || || |||||||| | |||| || || || | || ||||||||||| Sbjct 3282 GACATGAGGGGGGTAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTC 3223 Query 9849 ACCGTCAATAATCTG 9863 || ||||| ||||| Sbjct 3222 TCCATCAATGATCTG 3208 >seq9089 Length=12092 Score = 127 bits (140), Expect = 3e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 8763 CTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGC 8822 |||||||||||||||||||||||||||| | |||||||||||| ||| | | || | Sbjct 6728 CTCCGCCGAAGGTGCTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 6787 Query 8823 CTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8882 | || |||||||| ||||| || | ||| | ||||| || || || || ||||||| Sbjct 6788 CCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATACCGTTGGGTT 6847 Query 8883 GGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 |||| || || | ||| || || | || ||||||| ||| || |||||||| || || Sbjct 6848 GGGGTTTCTCGAGCAACAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAG 6905 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/245 (69%), Gaps = 10/245 (4%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| |||| ||||| || || || ||||| | ||| ||||| Sbjct 8893 TCACCGATGAGGATGAGCCGAGCCGTCTGGAAGAGCTGCTCGTCGCCCCAGCTGGGATGC 8952 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || || |||| || ||||| || | |||||| || | ||||||| || ||||| Sbjct 8953 TCCCGCCTCAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGCTGTACACG 9012 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 |||| || |||| ||| || || |||| || || | ||||| || | | Sbjct 9013 CTGAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCCATGGCCAGCTGCCTCTC------- 9065 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 ||| |||| ||| | |||| ||||| || || | |||||| ||||||||||| || Sbjct 9066 -CTTGGGGA--ATACACCATGGGCACCGGGCCAGCCGTGACCGTGGGGGGATACACCTCG 9122 Query 9850 CCGTC 9854 ||||| Sbjct 9123 CCGTC 9127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707903175766720