Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq54367 107 2e-18 >seq54367 Length=7739 Score = 107 bits (118), Expect = 2e-18 Identities = 111/144 (77%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 || || |||| | || ||||| || | |||||||||||| || | || ||||||||||| Sbjct 4160 ATTCATACCT-CGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCC 4218 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGC 21609 ||| || || | |||||| ||||| ||||| | || |||||||| || || || ||||| Sbjct 4219 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGC 4278 Query 21610 AGCAAATGCAACTAATCGTTCACC 21633 ||||| || |||| ||||| || Sbjct 4279 TGCAAAAGCTACTACACGTTCTCC 4302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531434136833120