Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq25250 98.7 9e-16 >seq25250 Length=4203 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | ||||| || || | ||||| || | ||||| | ||| | || | Sbjct 4027 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAGCCC 3968 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | || ||||||||| | |||||| ||||| |||||||| || || || ||||| Sbjct 3967 AGTGATACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCCGAC 3908 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || || || | || ||||||||||| ||||| | | | | | ||||| Sbjct 3907 CAGCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTAC 3848 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || ||||| || || ||||||| |||||| | || | || |||| Sbjct 3847 AACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGCCTGCGGGGTGGAA 3796 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || | ||||| || | |||||| | ||| | || | | Sbjct 3341 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3282 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || ||||| ||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 3281 TGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 3222 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || || | || ||||||||||| ||||| | | | | | ||||| || Sbjct 3221 GCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGTACCCTGTCTGACTACAA 3162 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 ||| ||||| ||||||||| | ||||| |||||| | || || || || || Sbjct 3161 CATCCAAAAGGAATCTACTCTGCATCTTGTCCTGCGCCTGAGGGGTGGCAA 3111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || | ||||| || | |||||| | ||| | || | | Sbjct 3797 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3738 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || ||||| ||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 3737 TGATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 3678 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || || | | ||||||||||| ||||| | | | | | ||||| || Sbjct 3677 GCAGAGGCTGATCTTTGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACAA 3618 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| ||||| ||||||||| | ||||| ||||| | || || || |||| Sbjct 3617 CATCCAAAAGGAATCTACTCTGCATCTTGTCCTACGCCTGAGGGGTGGAA 3568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478242445543360