Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq22784 87.8 5e-12 seq41348 86.0 2e-11 >seq22784 Length=40504 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 22499 TTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGC 22558 |||| ||||||| ||||||||||| |||||||| || | ||| ||| || ||||||| Sbjct 31524 TTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGGC 31465 Query 22559 TaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATG 22618 | || || | | | ||||| || || || || || |||||| | |||||| |||||| Sbjct 31464 TGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTTATTAGCAGAGATG 31405 Query 22619 AGG 22621 ||| Sbjct 31404 AGG 31402 >seq41348 Length=6166 Score = 86.0 bits (94), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 ||||||||| || || || | ||||| || || |||||||||| ||||||||||| Sbjct 3064 TACAAATGCCAAAGAGCTCTCTGCAAAGGGCGTGAAGATTTGGGATGCTAATGGATCACG 3123 Query 111449 TGACTTTCTAGAT--TCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||| || || ||| ||| ||| | | || || || || ||| | ||||||||| Sbjct 3124 TGAGTTCCTGGATAAGCAG--GGTTTCAGCACCAGAGAGGAGGGAGATTTGGGACCAGTT 3181 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || || || || ||| | || ||||| ||||| |||||| |||||| Sbjct 3182 TATGGTTTCCAGTGGAGGCATTTTGGAGCAGAATACAAAGATATGCAC 3229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302181515287016