Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq25250 111 1e-19 seq30392 104 2e-17 >seq25250 Length=4203 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 12/220 (5%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||||||||| || ||||||||||| | || ||| ||||| Sbjct 3356 CAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT----GCGTC 3411 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| |||||||| || | || |||| ||| ||||| || | |||||||| Sbjct 3412 CATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTT 3471 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || ||| || | | | ||||| | |||||| ||||| ||| Sbjct 3472 TGTCCTGGATCTTGGC--CTTGACGTTTTCTATGGTGTCACTGGGCTCGACTTCCAAGGT 3529 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||| || || ||||| || || ||||| ||||||||| Sbjct 3530 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3569 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || |||||||| || || ||||||||||| | | Sbjct 3798 CCACCCCGCAGGCGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 3857 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| ||||||||| || | || |||| ||| ||||| || Sbjct 3858 AGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGA 3917 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || ||| || || | | | || || | |||||| Sbjct 3918 ATGCCCTCTTTGTCTTGGATCTTGGCT--TTGACATTCTCGATGGTATCACTGGGCTCGA 3975 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 ||||| |||||||| || || ||||| || || ||||| ||||||||||| Sbjct 3976 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 4027 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | |||||| || || |||||||| ||||||||||| | || ||| |||| Sbjct 3585 AGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 3644 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| ||||||||| ||| | || |||| ||| || || || | |||||| ||||| Sbjct 3645 TCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 3704 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | || || | |||||| ||||| |||||||| Sbjct 3705 TGGATCTTGGC--CTTGACGTTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATGG 3762 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || || ||||| || || ||||| ||||||||| Sbjct 3763 TCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3797 Score = 105 bits (116), Expect = 5e-18 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | |||||| || || |||||||| ||||||||||| | || ||| |||| Sbjct 3128 CAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGTCCGTC 3187 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| ||||||||| || | || |||| ||| || || || | |||||| ||||| Sbjct 3188 TTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 3247 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | || || | |||||| ||||| ||||||| Sbjct 3248 CTGGATCTTGGC--CTTGACATTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATG 3305 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || ||||| || || ||||| ||||||||| Sbjct 3306 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3341 >seq30392 Length=48271 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||||||||| || ||||||||||||| || ||| ||||| Sbjct 47848 CAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTC 47903 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| || || || ||| | || |||| ||| ||||| || | ||| || | Sbjct 47904 CATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCT 47963 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || |||||| | | | ||||| | |||||| ||||| ||| Sbjct 47964 TGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAAGGT 48021 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || ||||| || || ||||| |||||||| Sbjct 48022 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 48060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/209 (69%), Gaps = 12/209 (6%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC----TCCAA 16788 || || ||||||||||| || ||||||||||| | || ||| |||||| |||| Sbjct 47630 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT----GCGTCCATCTTCCAG 47685 Query 16789 TTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCA 16846 || || || ||| | || |||| ||| ||||| || | ||| || ||||| || Sbjct 47686 CTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGAT 47745 Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906 || || |||||| | | | ||||| | ||||| || | ||||||||| || Sbjct 47746 CTTGGC--CTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATGGTCTTG 47803 Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||| |||||||| Sbjct 47804 CCAGTCAGGGTCTTCACAAAGATCTGCAT 47832 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||||||||| || ||||||||||| | || ||| |||| Sbjct 48076 CAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTC 48135 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || || || ||| | || |||| ||| ||||| || | ||| || ||||| Sbjct 48136 CTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 48195 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||||| |||||| | | | ||||| | |||||| || | |||||||| Sbjct 48196 TTGAATTTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGT 48255 Query 16903 TTTTCCGGTCAGCGT 16917 || || ||||| || Sbjct 48256 CTTGCCAGTCAGGGT 48270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404741481142120