Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6229 118 7e-22 seq2977 109 4e-19 seq48465 107 1e-18 seq30392 98.7 7e-16 >seq6229 Length=1454 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||||||||| ||| |||||||| ||||| || |||||||| Sbjct 187 AAGTCCGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 246 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 247 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 281 >seq2977 Length=5441 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||| |||||||||||||||| |||||||| ||||| || |||||||| Sbjct 3697 AAGCCCGTTCCCCTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 3756 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || ||||||||||||||| || Sbjct 3757 TCATCCATTCATGTGCTTCACTAATTAGATGATGA 3791 >seq48465 Length=606 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 101 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCGT 160 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 161 GCCGGTATTTAGCCTTA 177 >seq30392 Length=48271 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||| | ||| |||||| |||||| || || ||||| || ||| Sbjct 47834 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 47893 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || |||||||| || || | || || || | ||| Sbjct 47894 AGGGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 47953 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || ||||||||||| | || || | || ||| Sbjct 47954 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACT 48013 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || |||| ||| ||||| || |||||||| Sbjct 48014 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 48060 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||| | || |||||| |||||| || || ||||| |||||| Sbjct 47606 CCACCCCTCAGGCGCAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 47665 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || || ||||| || || | || || || | ||| Sbjct 47666 AGGGTGCGTCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 47725 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || ||||||||||| | || || | | ||||| Sbjct 47726 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACC 47785 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||| ||||| || |||||||| Sbjct 47786 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 47832 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||| | ||| |||||| |||||| || || ||||| |||||| Sbjct 48062 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 48121 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || | || || || ||||| || || | || || || | ||| Sbjct 48122 AGGGTGCGTCCGTCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 48181 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | |||||| ||||| |||||| ||||||||||| Sbjct 48182 ATGCCTTCCTTGTCTTGAATTTTAGCCTTCACATTCT 48218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334660680722228