Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq22784 114 2e-20 seq54367 111 2e-19 seq52070 109 7e-19 >seq22784 Length=40504 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | || ||||| || || ||||| ||||| ||||| | ||| | Sbjct 31402 CCTCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 31461 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 31462 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 31521 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 31522 CAACGACTCTCTCACC 31537 >seq54367 Length=7739 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 ||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 4167 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4226 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 4227 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAAG 4286 Query 32803 C 32803 | Sbjct 4287 C 4287 >seq52070 Length=3230 Score = 109 bits (120), Expect = 7e-19 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 ||||| ||||| ||||| ||||||||||| || || | || || ||||||| ||| || Sbjct 1231 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCTCTGC 1290 Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| || ||||| ||||| |||||| || |||||| | | || || |||||||||| Sbjct 1291 TCCTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAATGCCACGG 1349 Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216 |||| ||| ||||| | | | ||||| Sbjct 1350 CTCCAGGTAGATGGCAAAAGCCCCAGG 1376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633076082964800