Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq25250 95.1 1e-14 seq30392 87.8 2e-12 >seq25250 Length=4203 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| | ||||| || ||| Sbjct 3796 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 3737 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || || ||||||||||| ||||| || ||||| Sbjct 3736 GATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3677 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| |||||||| | || || |||||| | || || |||||| Sbjct 3676 CAGAGGCTGATCTTTGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACAAC 3617 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| ||||| || Sbjct 3616 ATCCAAAAGGAATCTAC 3600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| | ||||| || ||| Sbjct 3340 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 3281 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || || ||||||||||| ||||| || ||||| Sbjct 3280 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3221 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || |||||||| | || || || ||| | || || |||||| Sbjct 3220 CAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGTACCCTGTCTGACTACAAC 3161 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| ||||| || | ||| | || |||| Sbjct 3160 ATCCAAAAGGAATCTACTCTGCATCTTGTCCTGCG 3126 >seq30392 Length=48271 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || ||| || ||| | || || | || Sbjct 48264 ACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGTGACACCATTGAGAATGTGAAGGCT 48205 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||||||||| || ||||| || || || || | || || ||||| || || Sbjct 48204 AAAATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAG 48145 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| |||||| | || || |||||||| || || || ||||| | ||| Sbjct 48144 CAGCTGGAGGACGGACGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTCCAT 48085 Query 22423 TTAGTTTTGCG 22433 | || |||| Sbjct 48084 CTTGTGCTGCG 48074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419368957848220