Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq30392 98.7 8e-16 >seq30392 Length=48271 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || || || || Sbjct 47864 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTCCCG 47923 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 47924 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 47983 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| |||| ||| | || ||||| ||||| || Sbjct 47984 ACATTCTCAATGGTGTCACTGGGCTCGACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 48043 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 48044 TTCACAAAGATCTGCAT 48060 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || |||||| || || || ||| Sbjct 47636 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTCCCA 47695 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 47696 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 47755 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || || | ||| | || ||||| ||||| || Sbjct 47756 ACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 47815 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 47816 TTCACAAAGATCTGCAT 47832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419775010207056