Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq51162 122 2e-22 seq52070 100 5e-16 seq44013 98.7 2e-15 seq54367 84.2 4e-11 seq22784 84.2 4e-11 >seq51162 Length=873 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| ||| | ||||||||| || ||||| ||||| ||||| ||||| ||||||| Sbjct 548 CCACCTCATCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCATTTGATGG 489 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 | ||||||| ||| || ||| ||| |||||||| ||| |||||||||||| |||| Sbjct 488 TCCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGGG 429 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || |||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 428 TGCCAGTCTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 369 Query 244884 TGCGAGCCTTGCCCT 244898 ||| || ||||| Sbjct 368 GGCGGGCACGGCCCT 354 >seq52070 Length=3230 Score = 100 bits (110), Expect = 5e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || |||||||||||| || ||||||||||| ||| ||||| |||| |||||||| || Sbjct 1236 CTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCTCTGCTCCTC 1295 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | ||| ||||||||| | | || | || ||||||| ||| | ||||| ||||||| Sbjct 1296 CTTGCCTGTGTTCTTCTTTAAGTCAAGGAACTCAAAGATGTCCAAATGCCACGGCTCCAG 1355 Query 245128 GTAGA 245132 ||||| Sbjct 1356 GTAGA 1360 >seq44013 Length=4345 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 ||||||| ||||| || || || || | ||| ||||| ||||||| || ||||||| Sbjct 2942 CCACCTGGAACTCCCCTGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGA 3001 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || ||| |||||||||| ||||| || ||| || || |||||||| |||| || | Sbjct 3002 TGGACTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCCGTTGGCATGGGAGACAGGAGGA 3061 Query 244215 GACTGTTCCTCACGCCGTGCCT 244236 | ||||||||||| || | ||| Sbjct 3062 GGCTGTTCCTCACACCATACCT 3083 >seq54367 Length=7739 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | ||||| || || |||||||| || ||| | || || || || || ||| Sbjct 4290 GTAGCTTTTGCAGCCGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 4231 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | | | ||||| |||||||| || || || ||||||||||| || ||| Sbjct 4230 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAGAC 4171 Query 42828 GAGG 42831 |||| Sbjct 4170 GAGG 4167 >seq22784 Length=40504 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| | || |||||| | || || || ||||||||||| ||||| |||| || Sbjct 31537 GGTGAGAGAGTCGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 31478 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || || || Sbjct 31477 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTT 31418 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 31417 ATTAGCAGAGATGAGG 31402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943510684002880