Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq25250 140 8e-28 seq30392 86.0 1e-11 >seq25250 Length=4203 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || ||||| | ||| ||||| ||||| || ||||| | Sbjct 3797 TCCACCCCGCAGGCGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 3856 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||||||||| | |||||| || ||||||||||| | ||| || || || Sbjct 3857 CAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTG---GTCGGG 3913 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || ||||| || ||||| || ||||| || || || || | ||| || | || Sbjct 3914 GGGAATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTATCACTGGGCTC 3973 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| ||||| || ||||| ||||| || || ||||||||| Sbjct 3974 GACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 4025 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | || || ||||| | || ||| |||||||| || ||||| | Sbjct 3569 TCCACCCCTCAGGCGTAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 3628 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||||||||| | |||||| || || |||||||| | ||| ||| | || Sbjct 3629 CAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 3688 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || |||||||| || || || ||||| || || | ||| || | || || Sbjct 3689 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCACTGGGCTCGAC 3748 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| ||||| || ||||| ||||| || || ||||||||| Sbjct 3749 TTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3797 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | || || ||||||||||| | |||||| || ||||| Sbjct 3149 TTCCTTTTGGATGTTGTAGTCAGACAGGGTACGTCCGTCTTCCAGTTGTTTGCCAGCGAA 3208 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| ||| | || || || || || |||||||| || || || || || Sbjct 3209 GATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 3268 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| || | || ||||| | ||||| ||||| || ||||| ||||| || Sbjct 3269 CTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 3328 Query 288462 GAATATCTGCATT 288474 || ||||||||| Sbjct 3329 AAAGATCTGCATT 3341 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | || || ||||| | ||| || || ||||| || ||||| | Sbjct 3341 TCCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 3400 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| ||||| | ||||| || ||||||||||| | ||| || || || Sbjct 3401 CAGGGTGCGTCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTG---GTCGGG 3457 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || ||||| |||||||| || || || ||||||||||| | || || | || Sbjct 3458 GGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCTATGGTGTCACTGGGCTC 3517 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | ||||| ||||| || ||||| ||||| || || ||||||||| Sbjct 3518 GACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3569 >seq30392 Length=48271 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||| | || ||||||||||| Sbjct 48077 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCC 48136 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || |||||||| | ||| || | || || ||||| || || Sbjct 48137 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 48196 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || ||||| || ||||| || || || | || || | || || || || ||||| ||| Sbjct 48197 TGAATTTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTC 48256 Query 288442 TTCCCGGTCAGAGTC 288456 || || ||||| ||| Sbjct 48257 TTGCCAGTCAGGGTC 48271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178593555967464