Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq25250 111 2e-19 seq4243 96.9 4e-15 seq19502 95.1 1e-14 >seq25250 Length=4203 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||| | ||| | ||| |||||| || || ||||| |||| ||| || || | Sbjct 3354 CGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 3413 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || |||||||| || || | ||||||||||| || | || ||| ||| Sbjct 3414 TCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTG 3473 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || |||| | | | ||||| || | || || || | |||||| Sbjct 3474 TCCTGGATCTTGGCCTTGACGTTTTCTATGGTGTCACTGGGCTCGACTTCCAAGGTGATG 3533 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || ||||| || || ||||| |||||||| |||||| Sbjct 3534 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3569 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| || | ||| | ||| ||| || || || ||||| |||| ||| || || || Sbjct 3810 CGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 3869 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || || || |||||||| || || | ||||||||||| || | || ||| ||| Sbjct 3870 TCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTG 3929 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||| || ||||| || | | || || || | || || || | |||||| Sbjct 3930 TCTTGGATCTTGGCTTTGACATTCTCGATGGTATCACTGGGCTCGACTTCCAGAGTGATG 3989 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || ||||| || || ||||| |||||||| |||||||| Sbjct 3990 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 4027 >seq4243 Length=13345 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 962 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 903 Query 57067 TACTACCGAGGATTGAATATA 57087 ||||| |||||| |||| ||| Sbjct 902 TACTAACGAGGAGTGAAAATA 882 >seq19502 Length=9771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/83 (86%), Gaps = 3/83 (4%) Strand=Plus/Plus Query 57002 ATTTTCTCCTC---GGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||||||||||| | | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 9117 ATTTTCTCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 9176 Query 57059 CACCACTATACTACCGAGGATTG 57081 ||||||||||||| |||||| || Sbjct 9177 CACCACTATACTAACGAGGAGTG 9199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542736212249920