Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq52070 89.7 5e-13 seq44013 89.7 5e-13 >seq52070 Length=3230 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 || ||||| | ||||||||| |||||||| ||||| |||||| ||||||| | || ||| Sbjct 2110 ACAAATGGGAACTCCAACGGGCTCGTCCCAATGCTGAGGGTCTACAACAACACTGCCCGC 2051 Query 94144 TACGTGGACCAGGGTGG 94160 ||||||||||||||||| Sbjct 2050 TACGTGGACCAGGGTGG 2034 >seq44013 Length=4345 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 ||||||| ||| || || || | |||||||| ||||| ||||| || |||||||| Sbjct 3077 GGTGTGAGGAACAGCCTCCTCCTGTCTCCCATGCCAACGGCTTCCACTGCTCAGATCCTG 3018 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGC-GGGTGCTCGC 95198 |||||||||||||| |||| |||| |||| |||| | ||| ||| || | || ||| | Sbjct 3017 GGCAACAACGAGTCCATCGAGCCCTACACCAGCAACATCTAC-ACACGCAGAGTCCTCTC 2959 Query 95199 CGGGGAATTCC 95209 ||||| |||| Sbjct 2958 AGGGGAGTTCC 2948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494289154600480