Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq25250 109 5e-19 seq51162 86.0 6e-12 >seq25250 Length=4203 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | ||||| || ||||| || ||||| || || || || Sbjct 3126 CGCAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGTCCG 3185 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || ||||| |||||| |||||| | ||||||||| || || |||||||||||| Sbjct 3186 TCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTG 3245 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | ||| || | ||||||||| | ||| | Sbjct 3246 TCCTGGATCTTGGCCTTGACATTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATG 3305 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 3306 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3340 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || ||||| || ||||| || || ||||| || || || ||||| ||| Sbjct 3600 GTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGTTGTTTGCCA 3659 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | ||||||||| || || ||||||||||||||| ||| || |||| Sbjct 3660 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3719 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | ||||||||| | ||| | || ||||| ||||| || Sbjct 3720 ACGTTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 3779 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 3780 TTCACAAAGATCTGCAT 3796 >seq51162 Length=873 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 ||| |||||| | |||| ||| ||||| | ||| ||||||||||| |||||| | || Sbjct 544 CTCATCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCATTTGATGGTCCC 485 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCC 146783 || || | ||||| || | ||||||||| ||| |||||||||||||| || || Sbjct 484 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGGGTGCC 425 Query 146784 GGTTTCGACATTGGTCTCGACGATG 146808 || ||| | || ||||| |||| Sbjct 424 AGTCTCGGTCTGGGACTCGATGATG 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475083619373120