Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq4510 159 5e-34 seq9089 118 2e-21 >seq4510 Length=123898 Score = 159 bits (176), Expect = 5e-34 Identities = 213/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || || || || ||||||||| || ||||| ||| | || |||| Sbjct 5449 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 5390 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | |||||| || || || | || |||||||||||||| ||||||||| | || | Sbjct 5389 TATTGATGATGTCAAAGCCCACTTTTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGAG 5330 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || |||||||| |||| || | || Sbjct 5329 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGAGCTCCCATTTCCACCATTG 5270 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| ||||| || ||||| |||| | ||| | ||| || || | Sbjct 5269 TTTCACCAAAGATGGCACCTGGACGTGGCTTTTCTACGAGAAGGCCTGGGTATAGCTCCA 5210 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | || ||||| || |||||| || || || || || || || ||| Sbjct 5209 TAGCATCAATATCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 5154 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || ||||| || ||||| || Sbjct 3449 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCAGGGTGCTCCTGTTTCAGG 3390 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| |||||| || ||||||||||| || ||||||||||| || || || Sbjct 3389 ATGTCACAGACCCGGTTGTGCTCCCTCAGCCATATTGTTGCGTACATCATCAAGCCTGGG 3330 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||| ||||| || | |||||| | ||| ||| | || || || | || | Sbjct 3329 ACCAAACCGAACACCTCCTGCCCCACAGAAAACTGCAAGTGTTCAGGGACATGAGGGGGG 3270 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 3269 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATGATC 3210 Query 9967 TG 9968 || Sbjct 3209 TG 3208 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| || ||||| | ||| || | | ||| || | | ||| ||| | ||| Sbjct 4649 ATGGAGTTATTGTAGAGGAACTGCTGGAAACTGTATTCCTGGTCATTTATCTGGAAAGTG 4590 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| |||||||||||||||| || || || || ||||| ||| Sbjct 4589 TCAGGCAGGAGTGGGTGCCAGTGGTAGAGGGTATTGAATTCAGCTGCAATCCGGTTTTGG 4530 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| | ||| |||||| | ||| || ||||| | |||| ||||||||| | Sbjct 4529 TACTGAAATCGCTGGT--GGAACAGCAGCTCAGGATCAAACTTGAGCTTGAAGTGGTAGC 4472 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | || || ||||| | || | ||| || || || ||||| || Sbjct 4471 CACTCAAATGTTGCACATAGTCCTCAATAACAATCTTGATTGTCTCCCCTGT 4420 >seq9089 Length=12092 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||||||||||||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 6730 CCGCCGAAGGTGCTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 6789 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||| ||||| || | ||| | ||||| || || || || | ||| | Sbjct 6790 TTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATACCGTTGGGTTGG 6849 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| |||| | ||||| | || | || | ||| || | ||| ||||| || || Sbjct 6850 GGTTTCTCGAGCAACAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 6909 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 6910 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 6942 Score = 89.7 bits (98), Expect = 7e-13 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| | ||| || ||||| | |||| | | | ||| ||| Sbjct 8110 ATGAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAGCTGTACT-CTTGGC-CCTGGATGA 8167 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || || |||| ||| |||||| ||||||| |||||||| |||| || | Sbjct 8168 CGAAGGAGTCGGGCATCAGCCCGTGCCAGTGGTAGAGCTGGTTGAACTCCACCGCGATGC 8227 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 ||||| ||||||| || | || || ||||| | ||| ||||| || | || || | Sbjct 8228 GGTTCCGGTACTGGAACGGGGACCCAAACAGCAGCTCGGGGTCGAACTTGAGGCTGAGGA 8287 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||| ||||| ||||||||||| | || | || |||||||| ||||| Sbjct 8288 AGTACCCACTGAGGTGCTGGACATAATCCTCAATGACGATCTTAATGGTCTCCCC 8342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723093037239200