Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq44013 104 4e-17 >seq44013 Length=4345 Score = 104 bits (114), Expect = 4e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | ||||||| | ||||||| |||||| || || |||| Sbjct 212 CCTGCTTCCAGCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCAGCGATGT 271 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||| ||||||||||| ||||||||||||| | | ||||| ||||| || | | Sbjct 272 GGATGTTGAGAGACTGGCTCTGGTCGATGAAAGCTCCTCTGTCTGCTGCCATCTTCAGGA 331 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 || ||||| || ||||||||||| |||||| Sbjct 332 CAGTTTTCTGGGAGATCTCCCACACTGTCTTG 363 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || || || || | || ||| | | |||| ||||| | || |||| | Sbjct 2946 CTGGAACTCCCCTGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 3005 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | |||||||| ||| ||||| |||||||||| |||||| ||| Sbjct 3006 CTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCCGTTGGCATGGGAGACAGGAGGAGGCT 3065 Query 204316 GTTGCGCACACCGTA 204330 ||| | |||||| || Sbjct 3066 GTTCCTCACACCATA 3080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794457570585280