Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq25250 132 5e-26 seq30392 131 2e-25 >seq25250 Length=4203 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 ||||| || || | |||| || ||||||| ||| ||||||||||| |||||||| Sbjct 3111 TTGCCACCCCTCAGGCGCAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCA 3170 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || || || |||| || || || ||||| ||||| |||| | |||||| || | Sbjct 3171 GACAGGGTACGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGG 3230 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || |||||||||| |||||| ||||| || | | || || || | || Sbjct 3231 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCACTGGGCTCG 3290 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 3291 ACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3341 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||| | || |||||| ||||| |||||||| || || ||||| | Sbjct 3354 CGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 3413 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| ||||| ||||| |||| | ||||||||||| || | || ||| ||| Sbjct 3414 TCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTG 3473 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | ||||| || | || || |||| |||||| Sbjct 3474 TCCTGGATCTTGGCCTTGACGTTTTCTATGGTGTCACTGGGCTCGACTTCCAAGGTGATG 3533 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||| ||||| || || |||||||| |||||| Sbjct 3534 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3569 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| ||||||||||| |||||||| || || ||||| |||| || Sbjct 3588 ACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCC 3647 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || ||||| || || |||| | |||||| || | || | || |||||||||| | Sbjct 3648 AGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGG 3707 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | || || || | || || |||| |||||||| ||| Sbjct 3708 ATCTTGGCCTTGACGTTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATGGTCTTG 3767 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||| || || |||||||| |||||| Sbjct 3768 CCAGTCAGGGTCTTCACAAAGATCTGCATT 3797 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | || ||| || ||||| |||||||| || || ||||| || Sbjct 3810 CGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 3869 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || || ||||| ||||| |||| | ||||||||||| || | || ||| ||| Sbjct 3870 TCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTG 3929 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| |||| || | | || || || | || || |||| |||||| Sbjct 3930 TCTTGGATCTTGGCTTTGACATTCTCGATGGTATCACTGGGCTCGACTTCCAGAGTGATG 3989 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || ||||| ||||| || || |||||||| |||||||| Sbjct 3990 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 4027 >seq30392 Length=48271 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||| | || |||||| ||||| ||||||||||| || ||||| | Sbjct 47846 CGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 47905 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| ||||| || |||| | ||||||||| | || | || |||||| Sbjct 47906 TCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 47965 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| || | || || |||| |||||| Sbjct 47966 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAAGGTGATG 48025 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||| ||||| Sbjct 48026 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 48060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564742488089760