Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq25250 158 1e-33 seq30392 125 7e-24 >seq25250 Length=4203 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 3569 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3510 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| | || | || |||| ||||||||||| |||||| |||||| Sbjct 3509 TGACACCATAGAAAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCCGACC 3451 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | ||| |||||||||||||| || | |||||||| ||||||| Sbjct 3450 AGCAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACA 3391 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || ||| | |||||||| |||| || || Sbjct 3390 ACATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGCCTGAGGGGTGG 3342 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 3341 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3282 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | || | || |||| ||||| ||||| |||||| | || || Sbjct 3281 TGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 3222 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| |||||||| ||||| |||| || ||||| |||||||| Sbjct 3221 GCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGTACCCTGTCTGACTACAA 3162 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| | || |||||| | || ||||| |||| || ||| Sbjct 3161 CATCCAAAAGGAATCTACTCTGCATCTTGTCCTGCGCCTGAGGGGTGGC 3113 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || || || || || || || ||||| |||||||| | || |||||| | Sbjct 4028 AAAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAGCC 3969 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || || | | | | | | |||| || |||| ||||||||||| |||||| |||| Sbjct 3968 CAGTGATACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCCGA 3909 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | ||| |||||||| ||||| |||| |||||||| ||||| Sbjct 3908 CCAGCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTA 3849 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| || || | || || ||| | || ||||| Sbjct 3848 CAACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCG 3810 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 3797 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3738 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | || | || |||| ||||| ||||| |||||| | || | Sbjct 3737 TGATACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATC 3679 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | || |||||||| ||||| |||| |||||||| ||||||| Sbjct 3678 AGCAGAGGCTGATCTTTGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACA 3619 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||| | || |||||| | || || || |||| || || Sbjct 3618 ACATCCAAAAGGAATCTACTCTGCATCTTGTCCTACGCCTGAGGGGTGG 3570 >seq30392 Length=48271 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 48060 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 48001 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 48000 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 47941 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | |||||||| |||||||||| Sbjct 47940 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 47881 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | |||||||| |||| || || Sbjct 47880 ATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGCCTGAGGGGTGG 47834 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| || ||| | | Sbjct 47832 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCTAGT 47773 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 47772 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 47713 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | |||||||| ||||||||| Sbjct 47712 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 47653 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || || || | |||||||| |||| || ||| Sbjct 47652 ATCCAGAAGGAGTCCACTCTCCACCTTGTGCTGCGCCTGAGGGGTGGC 47605 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTT 38321 || || || ||||| |||||||| | || || ||| ||| |||| | | | | | Sbjct 48270 ACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGTGACACCATTGAGAATGTG 48211 Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 || | ||||| | ||||| || || |||||| | ||||| ||| |||| || | || Sbjct 48210 AAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCT 48151 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || || |||||||| |||| |||||||| |||||||||||||| ||||| | || Sbjct 48150 GGGAAGCAGCTGGAGGACGGACGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACT 48091 Query 38442 CTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||| | |||||||| |||| || || Sbjct 48090 CTCCATCTTGTGCTGCGCCTGAGGGGTGG 48062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499733973393920