Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq49848 84.2 9e-11 >seq49848 Length=6199 Score = 84.2 bits (92), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| || | ||||| | || ||||| ||||||||| Sbjct 604 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 663 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| ||||||| || || || ||||| || || ||||| Sbjct 664 GAAGAAATTTCTGCTATGGTCCTGACAAAGATGAAGGAGACTGCAGA 710 Score = 84.2 bits (92), Expect = 9e-11 Identities = 126/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATT 451486 ||||| ||||| | || || ||||| ||| ||| ||| | | ||||| || || Sbjct 1175 ACAGCTGCTGCCATTGCCTACGGACT-GGA----CAAGAGAGAGGGC-GAAAAGAACATC 1228 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546 | || || || || ||||| |||||| |||| ||| | || ||||||| | || Sbjct 1229 CTGGTGTTCGACTTGGGTGGGGGAACTTTTGATGTCTCTCTCCTCACAATTGACAACGGA 1288 Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 || ||||||||| ||||||||||||||| ||||| || || || ||||| |||| Sbjct 1289 GTCTTTGAAGTAGTGGCAACCAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 1344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973941668548304