Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq38878 307 1e-78 seq20714 163 4e-35 >seq38878 Length=13300 Score = 307 bits (340), Expect = 1e-78 Identities = 1035/1597 (65%), Gaps = 32/1597 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| |||||||| || || | Sbjct 1685 TTCATCCTCCGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCAATGTCATCCTT-GC 1627 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | || || ||||| || || || ||||| | ||||||| | ||| || Sbjct 1626 TAAGGCGACCTTTGTCATTGGTGATAGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 1567 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | || || || |||| |||||||| ||||| | || || | || | || || || Sbjct 1566 CGGCGCTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 1507 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| || ||| |||| || || |||| ||| Sbjct 1506 CTCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCGAATTTACCCAGCAAGTTGTTGTCCT 1447 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGT 6865 ||| | | | ||||| ||||| || | | || || | | || || ||| Sbjct 1446 TCGTCATGGCCCTCTCACCCTCATACACCTGGACCAGGAC-GCTGCTCTGGTTGTCTGAG 1388 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||| | || || ||| | ||||| || || || | | || | | Sbjct 1387 TAGGTAGTGAAGGTCTGAGTTTGCTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCT 1328 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||||| || |||| || || |||||||| || || ||||| || ||| Sbjct 1327 GTCATCACTCCACCGGCCGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAAC 1268 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || || || || || | || ||| | | ||| || ||||| || | || ||| Sbjct 1267 AGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCCGCTTGCACAGCGGCACCG 1208 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| ||||| || | || || || ||||| || || || | ||| Sbjct 1207 TAAGCAACGGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 1148 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | ||| || || ||||| || || || ||||| |||| ||||| || | Sbjct 1147 TGTAGTAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACGATCTCCTGG 1088 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | || || || | ||| | || || || | || || || || |||| | Sbjct 1087 ATTTGGCCCTTGTCTAGCTTGGCATCGCGCAGAGCCTTCTCCACCGGCTCCAAGGTGCCA 1028 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| | || |||||||| || ||||| |||||||| || ||||| ||| Sbjct 1027 CGGAAGAGGTCAGCATTGAGCTCCTCAAAGCGGGCACGAGTAATGGAGGTGTAGAAGTCA 968 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTT 7342 | ||| || || | || || || |||||| | | ||| ||| || || | || Sbjct 967 ATGCCCTCATAGAGGGAGTCGATCTCAATGCTGGCTTG---CGTGGAGGAGCTGAGAGTG 911 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || | |||||| ||||| || | || | | || ||| ||| || | || Sbjct 910 CGCTTCGCCCTCTCACAAGCCGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCAGCGATG 851 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 || ||| || || || || || ||||| ||| || | | | || || Sbjct 850 TCGCGCTTGTGCTTGCGCTTGAATTCTTCCACGAAATGGTTCACCATGCGGTTGTCAAAG 791 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || || ||||||| ||| || || || || || | || || ||||||||||| | ||| Sbjct 790 TCCTCCCCACCCAGGTGGGTGTCTCCAGCTGTGGACTTCACCTCAAAGATACCATCCTCA 731 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | | ||||||||||| || || || ||||||||||| ||||| |||||| | Sbjct 730 ATGGTAAGGATAGAAACATCAAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACGTTCTTC 671 Query 7583 TCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | | | ||||| || | || || || || || || ||||| || || Sbjct 670 TCTCCTGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATGGCTGCTGCCGTGGGCTCG 611 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || |||||||| | ||| ||||||| || || | |||||||| || || || || Sbjct 610 TTGATAATACGCATCACGTTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTGGCGC 551 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || ||||| || || || || | ||| || | | || || || ||| Sbjct 550 TGGGAGTCATTGAAGTAAGCAGGCACGGTGATGACAGCATTCTGCACCTTGCGCCCCAGA 491 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||||| || ||||| |||||||| ||||| || |||||||| | | | Sbjct 490 TAAGCCTCAGCGATCTCCTTCATCTTGGTAAGCACCATGGAGCTGATCTCTTCTG-GGAA 432 Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 | || ||| | ||||| || | || || | | | |||| || || ||| Sbjct 431 GAAGGTCTTCATCTCACCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CACTCTC 378 Query 7876 GATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | | | ||| | ||||| || || ||| |||| |||| Sbjct 377 ATTCACCACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACCGTGGGGTCATCGTACTT 318 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| |||||||| |||||||| | ||||| ||||||||||||| ||||| Sbjct 317 GCGGCCGATGAGACGCTTCGCATCAAAGATGGTGTTGGTGGGGTTCATGGCCACCTGGTT 258 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051 ||| || || || ||||| || || || || ||||| || || || || | |||| | Sbjct 257 CTTGGCAGCATCGCCGATGAGGCGCTCCGTA---TCCGTGAAGGCCACATA-GCTGGGCG 202 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | || || || || |||||||| || || || || || | | | || | || || | Sbjct 201 TGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACACCCA 142 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| || ||||| || || | || || ||||| || Sbjct 141 CGCAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 105 >seq20714 Length=3824 Score = 163 bits (180), Expect = 4e-35 Identities = 360/540 (67%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| ||||| || || || Sbjct 1412 GCACCATAAGCCACGGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 1353 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | ||||| || ||||| || || || ||||| |||| ||||| Sbjct 1352 AAGTCCTGCAGCAGCTTCTGAATCTTTGGGATACGAGTAGAGCCACCCACCAGGACGATG 1293 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | ||| || |||| ||| | ||| || || | || || ||||| |||| Sbjct 1292 TCGTGGATCTGCGACTTGTCGAGCTTGGCGTCCCGCAGCGCCTTCTCCACAGGATCCAGG 1233 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| || ||||| || || || | ||| ||||| || ||| Sbjct 1232 GTGCCACGGAACAGGTCAGCGTTGAGCTCCTCGAAGCGAGCTCTGGTGATGGACGTGTAG 1173 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| ||| ||||| | || ||||| |||||| | | || | | || || | Sbjct 1172 AAGTCAATGCCCTCGTACAGAGAGTCAATCTCAATGCTGGCCTGCGTGCTGGAGGACAGG 1113 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || ||||| || ||||| || | || || | || | | ||| | Sbjct 1112 GTGCGCTTGGCACGCTCGCAGGCCGTGCGGAGCCGGCGCACTGCCCTCTTGTTCTCACTG 1053 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || || || | |||||| | | | || Sbjct 1052 ATGTCCTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTCACCATACGGTTGTCA 993 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| ||||||||||| || || || || || | ||| ||||||||||| || || Sbjct 992 AAGTCTTCTCCACCCAAGTGAGTGTCACCTGCTGTGGATTTCACTTCAAAGATGCCATCT 933 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | | || ||||| || || ||||| || |||||||| ||||| |||||| Sbjct 932 TCAATTGTCAGGATGGACACATCGAAGGTGCCACCTCCGAGGTCAAAGATGAGGACGTTC 873 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 ||||| || ||||| || || || || || || ||||| ||||| ||||| || || ||| Sbjct 766 TTCTTGTCCAGACCATAGGCTATGGCAGCAGCTGTTGGCTCATTGATAATTCGCAGCACA 707 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || || ||||| ||| | ||||||||||| || || || || || ||||| || || Sbjct 706 -TTGAGCCCTGCAATGGTTCCAGCATCTTTCGTGGCCTGACGCTGAGAGTCGTTGAAATA 648 Query 7714 GGCCGGGACCGTTACGACCGCGT 7736 ||| || || || || || |||| Sbjct 647 GGCTGGTACAGTCACCACAGCGT 625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634575566237920