Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq51414 93.3 5e-14 seq47594 93.3 5e-14 seq19502 93.3 5e-14 seq44013 91.5 2e-13 seq8764 91.5 2e-13 seq42053 84.2 3e-11 >seq51414 Length=58883 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 26470 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 26412 >seq47594 Length=25501 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1430 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1372 >seq19502 Length=9771 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 9634 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 9576 >seq44013 Length=4345 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | |||||||| |||| |||| |||||||| ||||| || |||||||| Sbjct 2976 GTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCAGTGGA 3035 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 ||| || |||||||||| || ||| || ||||| Sbjct 3036 AGCCGTTGGCATGGGAGACAGGAGGAGGCTGTT 3068 >seq8764 Length=23244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 ||| ||||||||||||||||| ||||| | |||||||| || || || |||| || Sbjct 5120 CTTCCCACGGAGTGGAAATACTCCATATTTGTCTCTACCAACCACTCCCAGGCCAGAAAC 5061 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA 168533 ||| || ||||| ||||| || ||||| |||| ||| |||||||| Sbjct 5060 AGCCAGTGTTTTGGCTGAGTCTCCCTCAGTCAGGATAAGTGTACA 5016 >seq42053 Length=50542 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||| ||||| |||| |||| |||||| Sbjct 30120 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCCAGGTCGCGGGCTCGATCCCCGT 30178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588459261906400