Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq51162 96.9 4e-15 seq54367 89.7 6e-13 >seq51162 Length=873 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||||||||| |||||||| | || || || |||| |||| | || || ||||| Sbjct 544 CTCATCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCATTTGATGGTCCC 485 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| ||||||| | || ||||||||||||||||| || || Sbjct 484 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGGGTGCC 425 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||||| ||||| |||| || || || | ||| Sbjct 424 AGTCTCGGTCTGGGACTCGATGATGGCGTACCA 392 >seq54367 Length=7739 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || ||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 2334 ATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTCCCTTCCAGAGAGATGTTTTCCAT 2393 Query 117045 AAAGTCAAATGGATTCT 117061 |||||||| ||||||| Sbjct 2394 GAAGTCAAAAGGATTCT 2410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589463180345120