Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq30392 129 1e-24 seq25250 123 6e-23 >seq30392 Length=48271 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||||||||| || || || ||||| || | || || | |||||||| Sbjct 47624 ACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 47683 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 47684 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 47743 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||||||||| | || || || ||||| | ||||| Sbjct 47744 ATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATGGTCTTG 47803 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 47804 CCAGTCAGGGTCTTCACAAAGATCTGCAT 47832 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||||||||| || || || ||||| |||| || || | |||||||| Sbjct 47852 ACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 47911 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 47912 AGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 47971 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || ||||| | ||| | ||| Sbjct 47972 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACTTCCAAGGTGATGGTC 48028 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 48029 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 48060 Score = 123 bits (136), Expect = 6e-23 Identities = 142/190 (75%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||||||||| || || || ||||| || | || || | || || || Sbjct 48080 ACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCCTCC 48139 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| ||||||||| Sbjct 48140 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 48199 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || |||||||||||||| ||| || || ||||| || | ||| Sbjct 48200 ATTTTAGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGAGTGATGGTC 48256 Query 195109 TTTCCTGTCA 195118 || || |||| Sbjct 48257 TTGCCAGTCA 48266 >seq25250 Length=4203 Score = 123 bits (136), Expect = 6e-23 Identities = 156/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||||||||| || || || ||||| || | || || | |||||||| Sbjct 3360 ACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 3419 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| || | || ||||| || |||||||| |||||||| || Sbjct 3420 AGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTCCTGG 3479 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||| || |||||||| ||| || ||||| | ||| | ||| Sbjct 3480 ATCTTGGCCTTGACGTTTTCTATGGTGTC---ACTGGGCTCGACTTCCAAGGTGATGGTC 3536 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| || || || || | |||||| Sbjct 3537 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3569 Score = 113 bits (124), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||||||||| || || ||||| || | || || | || ||||| Sbjct 3816 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCC 3875 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || |||||||| || | || ||||| || |||||||| ||||||||||| Sbjct 3876 AGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTCTTGG 3935 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||| ||||| ||||| || ||| || ||||| || || | ||| Sbjct 3936 ATCTTGGCTTTGACATTCTCGATGGTATC---ACTGGGCTCGACTTCCAGAGTGATGGTC 3992 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || || || | ||||||| Sbjct 3993 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTT 4026 Score = 102 bits (112), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| || || ||||| || ||||| || | || || | || ||||| Sbjct 3132 ACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGTCCGTCTTCC 3191 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || |||||||| || | || || || || |||||||| || ||||| || Sbjct 3192 AGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGG 3251 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||||||||| || ||| || ||||| | ||| | ||| Sbjct 3252 ATCTTGGCCTTGACATTCTCAATGGTATC---ACTGGGCTCGACTTCCAAGGTGATGGTC 3308 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| || || || || | |||||| Sbjct 3309 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3341 Score = 102 bits (112), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| || || ||||| || ||||| || | || || | || ||||| Sbjct 3588 ACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCC 3647 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || ||||| || | || || || || |||||||| || ||||| || Sbjct 3648 AGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGG 3707 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||||||||| || ||| || ||||| | ||| | ||| Sbjct 3708 ATCTTGGCCTTGACGTTCTCAATGGTATC---ACTGGGCTCGACTTCCAAGGTGATGGTC 3764 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| || || || || | |||||| Sbjct 3765 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108483861226196