Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq20714 111 1e-18 seq25250 87.8 1e-11 >seq20714 Length=3824 Score = 111 bits (122), Expect = 1e-18 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | ||||||||||| ||||| || ||||| || ||||| || || Sbjct 618 GTTACTAACGCTGTGGTGACTGTACCAGCCTATTTCAACGACTCTCAGCGTCAGGCCACG 677 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || || ||||||||||| || || ||| Sbjct 678 AAAGATGCTGGAACCATTGCAGGGCTCAATGTGCTGCGAATTATCAATGAGCCAACAGCT 737 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| | || ||||| || || || Sbjct 738 GCTGCCATAGCCTATGGTCTGGACAA 763 >seq25250 Length=4203 Score = 87.8 bits (96), Expect = 1e-11 Identities = 155/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGA 563310 ||| || || || |||||||| || ||| ||| ||||| || ||||| |||| || Sbjct 3575 CCTCAGGCGTAGGACAAGATGCAGAGTAGATTCCTTTTGG--ATGTTGTAGTCAGACAGG 3632 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | | ||||| |||||||| || ||||| || || || ||||||||||| ||||| Sbjct 3633 GTGCGTCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 3692 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 || || || || || || || || || |||||| |||||| || | ||| Sbjct 3693 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCACTGGGCTCGACTTCC 3752 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || ||||| || || || || || || ||||| Sbjct 3753 AAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025584142012120