Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq51162 129 1e-24 seq44013 104 4e-17 seq52070 87.8 3e-12 >seq51162 Length=873 Score = 129 bits (142), Expect = 1e-24 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||| |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 531 GTGTACTCCACGATCTCCGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGG 472 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || || ||||||||||||||||||| || ||||| |||| Sbjct 471 TTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 412 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCG 213691 ||| | | || | |||||| | | |||||| |||||||| Sbjct 411 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCG 368 >seq44013 Length=4345 Score = 104 bits (114), Expect = 4e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || |||||||| || || | ||| | ||| ||||||||||||||| Sbjct 2946 CTGGAACTCCCCTGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 3005 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| || || |||||||||| || ||||| || Sbjct 3006 CTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCCGTTGGCATGGGAGACAGGAGGAGGCT 3065 Query 213038 GTTCCTCACTCC 213049 ||||||||| || Sbjct 3066 GTTCCTCACACC 3077 >seq52070 Length=3230 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| ||||| || | ||| || || ||| ||||| |||| ||| | Sbjct 1231 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCTCTGC 1290 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| || | ||| || | || || || |||||||||||| ||||||||| Sbjct 1291 TCCTCCTTGCCTGTGTTCTTCTTTAAGTCAAGGAACTCAAAGATGTCCAAATGCCACGGC 1350 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 1351 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 1381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930715519697920