Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq51162 95.1 2e-14 seq52070 93.3 8e-14 seq22784 84.2 4e-11 >seq51162 Length=873 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||||| |||| |||| | |||||| || || ||||||||||| ||||||| Sbjct 548 CCACCTCATCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCATTTGATGG 489 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 ||||||||| | || || ||| | ||| | ||| ||||||||||| |||| Sbjct 488 TCCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGGG 429 Query 221850 CGCCAGTCTC 221859 ||||||||| Sbjct 428 TGCCAGTCTC 419 >seq52070 Length=3230 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || |||||||||||| || ||||| || || || || || Sbjct 1218 CTGGTTGGTTTCAACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAAAGGTC 1277 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| | |||||||||| ||| |||| ||| | | || | |||||||| ||||| Sbjct 1278 TCTGGCTCTCTGCTCCTCCTTGCCTGTGTTCTTCTTTAAGTCAAGGAACTCAAAGATGTC 1337 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||||||||| |||| ||| | ||| || |||| || Sbjct 1338 CAAATGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 1381 >seq22784 Length=40504 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || ||||||||||| || || |||||||| || ||||| ||||| || || || ||| Sbjct 31525 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 31466 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGA 26003 || ||| ||| ||| ||||| || ||| ||||| ||||| ||||| || ||||| || Sbjct 31465 CTGAAGAAGAGGGGCCTGATGCCTGGACTG-ACTTTCTCCAATGAGCTTATTAGCAGAGA 31407 Query 26004 CGAGG 26008 |||| Sbjct 31406 TGAGG 31402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928029878014720