Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq17576 194 2e-44 seq6155 102 9e-17 >seq17576 Length=9823 Score = 194 bits (214), Expect = 2e-44 Identities = 592/909 (65%), Gaps = 7/909 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || | |||| ||| | || || || |||||| || ||| || | Sbjct 9290 TGTGTCGCAAATACTGTTCCAAACACTTAACTGCAAAAGGGTCAACATCAGTGTCAAACT 9231 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || ||| || ||| || | Sbjct 9230 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCACCTACCCCAAAAA 9174 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || ||||| || || | || || ||||| | || ||||| | ||| | Sbjct 9173 CACAGACAGAGCGAATGTGAACTCCACTACACGGTGGGTAGGGTGCACCTTTGGACACAT 9114 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || ||||| Sbjct 9113 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACGTCGT 9054 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | | ||| ||||| || || |||| || | ||| | || ||||| | Sbjct 9053 ACTTGTCGCTAGAAGAAACTGCACCCGGGACTTCGGGGATTCTCTGAATTGTTGCCCATA 8994 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA-TTAACCTG 160403 || || || || ||||| ||||| || | ||| || ||||| | | || || Sbjct 8993 AGTACTCATCTGGACTGTAAGTGTCTTTTGCCCACTCAATGAATTTAAGTATTTTGCCAC 8934 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | | |||| || | |||| | || || || || || || || || || Sbjct 8933 TTTC-TAATACGTATTCCACAAACTTTCTGCTAACTACGAAATAGGCACTACCAGAAAAA 8875 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | ||||| ||| ||||| | || | Sbjct 8874 ATTGGAGTACCGAGAGGTGGTAGTTGCTTGTCTACACCTGTGTTCTTTATTTTACCATCA 8815 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || ||||| || || || | ||||| || || || Sbjct 8814 ATAATCTCATGGTGTTTTTTCCATCTCACTTCTTTATAAACAGGCATTTTCTCTGTTTCC 8755 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || ||| |||| ||||| | Sbjct 8754 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCTTGGTTGGTCTTTATG 8695 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| ||| || | |||||| | ||| ||||| || | || || || Sbjct 8694 GGAAAGTCCAGACCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 8635 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||||||||||||||| | |||||| ||||| || || || ||||| Sbjct 8634 TCTTTCATGCAGTTAATATCTGCCTGCACCCTGCTCCATGAAGCATAAACAACACTCTCT 8575 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| || || ||||| || || |||||| ||| | ||| || Sbjct 8574 AACTGGCTGGAAATAAAGACATTCTCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 8516 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | || ||||| || ||||| Sbjct 8515 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTTTGAGGGGCATAGAT 8456 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || | | || || ||||| ||||| || |||| | ||| || ||||| || || Sbjct 8455 TGATCTTAAAAGTCTATCAAACATATCTATTTTGTGATAAACCACTATCGAGTAAGCAAT 8396 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 8395 TGGAAATTC 8387 >seq6155 Length=1204 Score = 102 bits (112), Expect = 9e-17 Identities = 234/351 (67%), Gaps = 10/351 (3%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC------GT 160098 |||| |||| || || || || || |||| |||| || ||| ||||| | || Sbjct 1069 TGTGGCGCAAGTGCTCCTCGAGGCACTGGATGGCGG-CATCTCATCGTCTACCAGGGGGT 1011 Query 160099 CGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACC 160158 |||| || || || || |||||||| | ||| || |||||| || ||| || || Sbjct 1010 CGAACTTGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGACAGGTCGCCCACCC 954 Query 160159 CGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCG 160218 | | | ||||||||| || |||| |||| |||| |||||||| |||| || || Sbjct 953 CATAGATGCAGACGGAGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGAGCGCCCTTGC 894 Query 160219 CCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGG 160278 ||| || || ||||||||||| || | | | | || | |||||| || Sbjct 893 TGGTGTCGCCCTCCAGATACTGCCACTTAACTAGGCGAGGCAGGGCGTTCATGTCCGACA 834 Query 160279 TGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGG 160338 | | | |||| || | || | | || || ||||| ||||| || | || |||| Sbjct 833 GCTGGAACTTGTCGTTCTGAGGCATGCTGCCTGGCACGCCAGGCATGCGGTTGAGAGTGG 774 Query 160339 CCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 |||| | ||| ||||| |||||||| ||||| || | ||| || | ||||| Sbjct 773 CCCAGACGTGCTCGTCTGGGCTGTAGGTGTCTTTGGCCCACTCGAGGAACT 723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576712776734880