Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq46745 170 2e-36 seq6333 167 3e-35 seq19560 129 7e-24 seq18728 107 2e-17 seq54367 104 3e-16 seq51162 104 3e-16 seq52070 89.7 6e-12 >seq46745 Length=8286 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 413 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 354 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 353 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 294 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 293 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 234 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 233 GCACCTGCTTCAGCACCTTGTA 212 Score = 145 bits (160), Expect = 9e-29 Identities = 154/202 (76%), Gaps = 7/202 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | | Sbjct 1457 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACCGGC 1516 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | |||||| ||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 1517 TTGTGTTG----TGT---AGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 1569 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||||||| Sbjct 1570 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTATCGGGGT 1629 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||| ||||| Sbjct 1630 GCACCTGCTTCAGCACTTTGTA 1651 >seq6333 Length=1021 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 788 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 729 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 728 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 669 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||||||| Sbjct 668 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCGGTATCGGGGT 609 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 608 GCACCTGCTTCAGCACCTTGTA 587 >seq19560 Length=43182 Score = 129 bits (142), Expect = 7e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||||||||| |||| | || Sbjct 28645 GCTTGGCCAGCTCTCCCGGGAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 28704 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| ||| || || | ||||| || | | Sbjct 28705 TGGTTGAGCGCTTGTTGTAATGGGCCAGGCGGGACGCTTCCCCAGCAATGCGCTCAAAGA 28764 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 28765 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCAGTGTCGGGGT 28824 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 28825 GGACCTGCTTCAGCACCTTGTAGA 28848 >seq18728 Length=10059 Score = 107 bits (118), Expect = 2e-17 Identities = 141/202 (70%), Gaps = 24/202 (12%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 9386 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 9445 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || ||||||| |||| | Sbjct 9446 TGGTGGGGCGCTTGTTGTAGGGCGCCAGC------------------------TCGAAGA 9481 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 9482 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 9541 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 9542 GCACCTGCTTCAGCACCTTGTA 9563 >seq54367 Length=7739 Score = 104 bits (114), Expect = 3e-16 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| || ||||||||||| |||||||||| ||| | | || Sbjct 7427 CACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAAATATCATG 7486 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTCG 869944 ||| ||| ||||||| |||||||||| |||||||| |||| ||| |||||| Sbjct 7487 GTACTCGATGGGGAAGATGACAAAGCGGCGAGGGTTGTCCCGCAGCAGCGGTTCG 7541 >seq51162 Length=873 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| |||||||||||| | | | || |||||||||||||||||| | || Sbjct 522 ACGATCTCCGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTC 463 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || ||| |||| |||||||||||| | ||| |||||| |||| | | ||| | Sbjct 462 CTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 403 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||||| ||| Sbjct 402 ATGGCGTACCAGAGCTG 386 >seq52070 Length=3230 Score = 89.7 bits (98), Expect = 6e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | ||||||||| || || |||||||||||||| || ||||| ||||| ||||| | Sbjct 2725 CGGCGAGGCCGATGCCCCCAGCAGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCAT 2784 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATG 1630263 ||||||| || || |||| |||||||| Sbjct 2785 AGATGCCTTCAATGCTGTCGTCCTTCATG 2813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101379244029596