Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq25250 109 5e-19 seq30392 107 2e-18 >seq25250 Length=4203 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || | ||||| || ||| Sbjct 3568 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 3509 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||||| || || |||||||| |||||||| || || || ||||| || Sbjct 3508 GACACCATAGAAAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCCGACCAG 3449 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || ||||||||||| ||| | | | |||| || || ||| Sbjct 3448 CAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 3389 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || || | ||| |||| Sbjct 3388 ATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCG 3354 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || ||||| || ||| Sbjct 4024 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAGCCCAGT 3965 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||||||||||||||| || || || ||||| || Sbjct 3964 GATACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCCGACCAG 3905 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || ||||| ||||| || | | | |||| || || ||| Sbjct 3904 CAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACAAC 3845 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || || | || |||| |||| || || Sbjct 3844 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGCCTGCGGGGTGG 3798 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || | ||||| || ||| Sbjct 3796 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 3737 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || || ||||| Sbjct 3736 GATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3677 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || ||||| ||||| || | | | |||| || || ||| Sbjct 3676 CAGAGGCTGATCTTTGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACAAC 3617 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||||||||| || || || |||| Sbjct 3616 ATCCAAAAGGAATCTACTCTGCATCTTG 3589 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || | ||||| || ||| Sbjct 3340 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 3281 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || || ||||| Sbjct 3280 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3221 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || ||||| ||||| || | | | |||| || || ||| Sbjct 3220 CAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGTACCCTGTCTGACTACAAC 3161 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGA 24939 || ||||||||||| || || || | || |||| || | || ||| |||||| Sbjct 3160 ATCCAAAAGGAATCTACTCTGCATCTTGTCCTGCGCCTGAGGGGTGGC--AACTGA 3107 >seq30392 Length=48271 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 47833 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCTAG 47774 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 47773 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 47714 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| ||||| |||||||| ||| | | | |||| || || || Sbjct 47713 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 47654 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || ||| | ||| |||| || | || ||| Sbjct 47653 CATCCAGAAGGAGTCCACTCTCCACCTTGTGCTGCGCCTGAGGGGTGGC 47605 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || | ||||| || ||| Sbjct 48061 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 48002 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 48001 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 47942 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | |||| || || || Sbjct 47941 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 47882 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || || | ||| |||| Sbjct 47881 CATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCG 47846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449502882340640